Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Gm16464-201ENSMUST00000117815 1095 ntBASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Gm10232-201ENSMUST00000089221 720 ntBASIC19.44■□□□□ 0.7
Trim3Q9R1R2 5031439G07Rik-201ENSMUST00000047144 6845 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim3Q9R1R2 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trim3Q9R1R2 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Trim3Q9R1R2 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim3Q9R1R2 Gm28536-201ENSMUST00000190971 1317 ntBASIC19.43■□□□□ 0.7
Trim3Q9R1R2 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Trim3Q9R1R2 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 Ube2k-204ENSMUST00000201292 1529 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 Gm42501-201ENSMUST00000200220 1026 ntBASIC19.42■□□□□ 0.7
Trim3Q9R1R2 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 Tlx2-201ENSMUST00000089641 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 Trip10-207ENSMUST00000224947 2016 ntAPPRIS P2 BASIC19.42■□□□□ 0.7
Trim3Q9R1R2 Bbc3-201ENSMUST00000002152 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Tcea2-201ENSMUST00000103042 1183 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Hmbox1-204ENSMUST00000175905 1715 ntTSL 5 BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Raph1-201ENSMUST00000027168 2241 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim3Q9R1R2 Klf15-201ENSMUST00000032174 2373 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim3Q9R1R2 Sult4a1-201ENSMUST00000082365 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim3Q9R1R2 Tmem147-203ENSMUST00000207296 875 ntTSL 3 BASIC19.4■□□□□ 0.7
Trim3Q9R1R2 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim3Q9R1R2 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.4■□□□□ 0.7
Trim3Q9R1R2 Cdc16-201ENSMUST00000043962 2301 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim3Q9R1R2 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim3Q9R1R2 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim3Q9R1R2 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim3Q9R1R2 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
Trim3Q9R1R2 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim3Q9R1R2 Gm12504-201ENSMUST00000120860 2231 ntBASIC19.39■□□□□ 0.69
Trim3Q9R1R2 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
Trim3Q9R1R2 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim3Q9R1R2 Gt(ROSA)26Sor-201ENSMUST00000124246 1181 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim3Q9R1R2 AC093043.1-201ENSMUST00000226700 898 ntBASIC19.39■□□□□ 0.69
Trim3Q9R1R2 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
Trim3Q9R1R2 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
Trim3Q9R1R2 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim3Q9R1R2 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim3Q9R1R2 Snrnp40-201ENSMUST00000105994 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim3Q9R1R2 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC19.38■□□□□ 0.69
Trim3Q9R1R2 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim3Q9R1R2 Mrgbp-201ENSMUST00000029085 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim3Q9R1R2 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim3Q9R1R2 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Pdf-201ENSMUST00000055316 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Pth1r-201ENSMUST00000006005 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim3Q9R1R2 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
Trim3Q9R1R2 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim3Q9R1R2 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim3Q9R1R2 Gm11847-201ENSMUST00000125165 1119 ntBASIC19.35■□□□□ 0.69
Trim3Q9R1R2 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC19.35■□□□□ 0.69
Trim3Q9R1R2 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
Trim3Q9R1R2 Olig3-201ENSMUST00000053225 2072 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Trim3Q9R1R2 Retreg2-208ENSMUST00000190240 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Rps19-202ENSMUST00000108429 633 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim3Q9R1R2 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
Retrieved 100 of 76,532 protein–RNA pairs in 59.9 ms