Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC25.22■■□□□ 1.63
Scn11aQ9R053 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC25.22■■□□□ 1.63
Scn11aQ9R053 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
Scn11aQ9R053 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC25.22■■□□□ 1.63
Scn11aQ9R053 Krtap5-2-201ENSMUST00000067978 937 ntAPPRIS ALT2 TSL 5 BASIC25.21■■□□□ 1.63
Scn11aQ9R053 Arhgap27os2-201ENSMUST00000123812 1390 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
Scn11aQ9R053 Rims1-209ENSMUST00000218140 1434 ntTSL 5 BASIC25.21■■□□□ 1.63
Scn11aQ9R053 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC25.21■■□□□ 1.63
Scn11aQ9R053 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.63
Scn11aQ9R053 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC25.2■■□□□ 1.62
Scn11aQ9R053 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC25.2■■□□□ 1.62
Scn11aQ9R053 Pigx-211ENSMUST00000189013 982 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
Scn11aQ9R053 Pigx-201ENSMUST00000096109 993 ntAPPRIS ALT2 TSL 1 (best) BASIC25.2■■□□□ 1.62
Scn11aQ9R053 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
Scn11aQ9R053 Gm42418-201ENSMUST00000182010 1831 ntBASIC25.19■■□□□ 1.62
Scn11aQ9R053 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC25.19■■□□□ 1.62
Scn11aQ9R053 Spata33-201ENSMUST00000060133 491 ntAPPRIS P2 TSL 1 (best) BASIC25.19■■□□□ 1.62
Scn11aQ9R053 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Scn11aQ9R053 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
Scn11aQ9R053 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
Scn11aQ9R053 2310022A10Rik-205ENSMUST00000187960 1989 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Cdkl3-205ENSMUST00000109078 2216 ntAPPRIS ALT2 TSL 1 (best) BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Mlx-201ENSMUST00000017945 1965 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
Scn11aQ9R053 Nrl-203ENSMUST00000178694 1928 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Scn11aQ9R053 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
Scn11aQ9R053 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Scn11aQ9R053 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
Scn11aQ9R053 Ltk-205ENSMUST00000140224 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Scn11aQ9R053 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.16■■□□□ 1.62
Scn11aQ9R053 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC25.16■■□□□ 1.62
Scn11aQ9R053 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Arrdc2-201ENSMUST00000002989 2355 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Ier3ip1-201ENSMUST00000026487 1395 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Stac3-202ENSMUST00000160019 1581 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
Scn11aQ9R053 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC25.15■■□□□ 1.62
Scn11aQ9R053 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
Scn11aQ9R053 Gp1bb-201ENSMUST00000051160 645 ntAPPRIS P3 BASIC25.14■■□□□ 1.62
Scn11aQ9R053 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC25.14■■□□□ 1.62
Scn11aQ9R053 Dgat2-201ENSMUST00000033001 2262 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.62
Scn11aQ9R053 Rmdn2-208ENSMUST00000225357 2118 ntAPPRIS P1 BASIC25.14■■□□□ 1.61
Scn11aQ9R053 AC164550.2-201ENSMUST00000219127 2086 ntTSL 5 BASIC25.14■■□□□ 1.61
Scn11aQ9R053 Cadm1-201ENSMUST00000034581 1254 ntAPPRIS ALT1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Scn11aQ9R053 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Scn11aQ9R053 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Scn11aQ9R053 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC25.13■■□□□ 1.61
Scn11aQ9R053 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC25.13■■□□□ 1.61
Scn11aQ9R053 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC25.13■■□□□ 1.61
Scn11aQ9R053 Gm2011-201ENSMUST00000203124 1263 ntBASIC25.13■■□□□ 1.61
Scn11aQ9R053 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Scn11aQ9R053 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Scn11aQ9R053 Krt8-ps-201ENSMUST00000208495 945 ntBASIC25.12■■□□□ 1.61
Scn11aQ9R053 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC25.11■■□□□ 1.61
Scn11aQ9R053 3110082J24Rik-202ENSMUST00000199573 767 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Scn11aQ9R053 Gm9870-201ENSMUST00000063874 645 ntBASIC25.11■■□□□ 1.61
Scn11aQ9R053 Fance-204ENSMUST00000114804 1842 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Scn11aQ9R053 Snx21-204ENSMUST00000172577 1825 ntTSL 2 BASIC25.11■■□□□ 1.61
Scn11aQ9R053 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Scn11aQ9R053 Wipi1-202ENSMUST00000103060 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Scn11aQ9R053 Gm8770-201ENSMUST00000121113 1109 ntBASIC25.1■■□□□ 1.61
Scn11aQ9R053 Ssbp1-205ENSMUST00000121360 1188 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Chkb-201ENSMUST00000023289 1707 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Scn11aQ9R053 Tmem114-201ENSMUST00000023400 1406 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Scn11aQ9R053 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Scn11aQ9R053 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Scn11aQ9R053 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Scn11aQ9R053 Pgam1-201ENSMUST00000011896 1831 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Scn11aQ9R053 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
Scn11aQ9R053 Cetn4-203ENSMUST00000102955 1064 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Scn11aQ9R053 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC25.08■■□□□ 1.61
Scn11aQ9R053 Gm7143-201ENSMUST00000222811 859 ntBASIC25.08■■□□□ 1.61
Scn11aQ9R053 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Scn11aQ9R053 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Scn11aQ9R053 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.6
Scn11aQ9R053 Erh-201ENSMUST00000021559 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Scn11aQ9R053 Slc25a3-203ENSMUST00000164505 1483 ntAPPRIS P2 TSL 5 BASIC25.07■■□□□ 1.6
Scn11aQ9R053 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Scn11aQ9R053 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
Scn11aQ9R053 Gm12251-201ENSMUST00000117893 792 ntBASIC25.07■■□□□ 1.6
Scn11aQ9R053 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Scn11aQ9R053 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC25.06■■□□□ 1.6
Scn11aQ9R053 Akt1s1-203ENSMUST00000107882 1160 ntAPPRIS ALT2 TSL 3 BASIC25.06■■□□□ 1.6
Scn11aQ9R053 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC25.06■■□□□ 1.6
Scn11aQ9R053 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC25.06■■□□□ 1.6
Scn11aQ9R053 H2afj-201ENSMUST00000074556 1831 ntAPPRIS P2 BASIC25.06■■□□□ 1.6
Scn11aQ9R053 Csf2ra-201ENSMUST00000076046 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms