Protein–RNA interactions for Protein: Q9QZS2

Rnf4, E3 ubiquitin-protein ligase RNF4, mousemouse

Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf4Q9QZS2 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rnf4Q9QZS2 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Rnf4Q9QZS2 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rnf4Q9QZS2 Gm45364-201ENSMUST00000210883 159 ntBASIC20.96■□□□□ 0.95
Rnf4Q9QZS2 Fbxw2-202ENSMUST00000091020 1838 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rnf4Q9QZS2 Htra2-203ENSMUST00000113963 1629 ntTSL 5 BASIC20.96■□□□□ 0.95
Rnf4Q9QZS2 Nrg3-203ENSMUST00000173780 2137 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Gm9939-201ENSMUST00000067161 1154 ntBASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Kazald1-202ENSMUST00000111948 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rnf4Q9QZS2 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Pick1-204ENSMUST00000163571 2054 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Bspry-201ENSMUST00000030088 1757 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Fgfbp3-201ENSMUST00000057337 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Morf4l1-202ENSMUST00000169860 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Dusp22-203ENSMUST00000110310 2319 ntTSL 2 BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Sys1-202ENSMUST00000109352 2001 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
Rnf4Q9QZS2 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Hoxb6-202ENSMUST00000173432 1964 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Gm43545-201ENSMUST00000196765 2779 ntBASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Krt5-201ENSMUST00000023709 2190 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rnf4Q9QZS2 Aurkb-202ENSMUST00000108666 1831 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Rnf4Q9QZS2 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf4Q9QZS2 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf4Q9QZS2 Fez1-201ENSMUST00000034630 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf4Q9QZS2 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rnf4Q9QZS2 Rab1a-203ENSMUST00000109602 2626 ntTSL 5 BASIC20.91■□□□□ 0.94
Rnf4Q9QZS2 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Shc4-202ENSMUST00000110477 1988 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 D11Wsu47e-201ENSMUST00000042227 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Jkamp-202ENSMUST00000117449 1874 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
Rnf4Q9QZS2 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.94
Rnf4Q9QZS2 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC20.89■□□□□ 0.94
Rnf4Q9QZS2 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Rnf4Q9QZS2 Tram1-201ENSMUST00000027068 2938 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rnf4Q9QZS2 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Rnf4Q9QZS2 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Guk1-204ENSMUST00000170202 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Gm5131-201ENSMUST00000212776 1238 ntBASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rnf4Q9QZS2 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf4Q9QZS2 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf4Q9QZS2 Stau2-217ENSMUST00000162751 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf4Q9QZS2 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rnf4Q9QZS2 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.88■□□□□ 0.93
Rnf4Q9QZS2 Sdhaf1-201ENSMUST00000098586 2490 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Alx3-201ENSMUST00000014747 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rnf4Q9QZS2 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 56.2 ms