Protein–RNA interactions for Protein: Q9DC48

Cdc40, Pre-mRNA-processing factor 17, mousemouse

Known RBP Predictions only

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdc40Q9DC48 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Alyref2-201ENSMUST00000081527 1273 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
Cdc40Q9DC48 Pim3-201ENSMUST00000042818 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdc40Q9DC48 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdc40Q9DC48 Anp32e-210ENSMUST00000171368 878 ntTSL 3 BASIC19.22■□□□□ 0.67
Cdc40Q9DC48 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdc40Q9DC48 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Cdc40Q9DC48 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
Cdc40Q9DC48 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
Cdc40Q9DC48 Ube2b-201ENSMUST00000020657 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Ppp1cb-206ENSMUST00000202078 383 ntTSL 5 BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Dynll1-201ENSMUST00000009157 2030 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Cntln-202ENSMUST00000102819 2239 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Cdc40Q9DC48 Gm11837-201ENSMUST00000136992 876 ntTSL 2 BASIC19.2■□□□□ 0.66
Cdc40Q9DC48 Gm2415-203ENSMUST00000149952 435 ntTSL 5 BASIC19.2■□□□□ 0.66
Cdc40Q9DC48 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC19.2■□□□□ 0.66
Cdc40Q9DC48 Bloc1s5-202ENSMUST00000224115 1020 ntBASIC19.2■□□□□ 0.66
Cdc40Q9DC48 Rfng-201ENSMUST00000026156 2118 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Cdc40Q9DC48 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Cdc40Q9DC48 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Cdc40Q9DC48 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Gm18190-203ENSMUST00000209944 389 ntTSL 2 BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 1700020G03Rik-201ENSMUST00000211264 889 ntBASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Gm40881-201ENSMUST00000223397 166 ntBASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Hist2h2ab-201ENSMUST00000073115 444 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Rps2-ps6-201ENSMUST00000095471 855 ntBASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Gm37415-201ENSMUST00000192265 2054 ntBASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Ndrg2-202ENSMUST00000111632 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Cdc40Q9DC48 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Hmg20b-202ENSMUST00000105323 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 March2-206ENSMUST00000173329 2566 ntTSL 2 BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Plekhj1-201ENSMUST00000036805 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Tspan17-201ENSMUST00000026993 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Gm8093-201ENSMUST00000128935 1892 ntBASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Rp2-203ENSMUST00000115391 1398 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Amn-201ENSMUST00000021707 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Cdc40Q9DC48 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Oser1-201ENSMUST00000046908 1620 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Clta-206ENSMUST00000170241 1079 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Tmem74b-202ENSMUST00000109872 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Cdc40Q9DC48 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdc40Q9DC48 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC19.15■□□□□ 0.66
Cdc40Q9DC48 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Cdc40Q9DC48 Sumf1-203ENSMUST00000167338 1044 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Cdc40Q9DC48 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC19.15■□□□□ 0.66
Cdc40Q9DC48 1700018A14Rik-201ENSMUST00000195587 711 ntBASIC19.15■□□□□ 0.66
Cdc40Q9DC48 AC116713.1-201ENSMUST00000215074 430 ntBASIC19.15■□□□□ 0.66
Cdc40Q9DC48 A030005L19Rik-201ENSMUST00000220768 806 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Cdc40Q9DC48 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC19.15■□□□□ 0.66
Cdc40Q9DC48 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
Cdc40Q9DC48 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Cdc40Q9DC48 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Prrt2-206ENSMUST00000202045 429 ntTSL 5 BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Clec3b-201ENSMUST00000026890 992 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 D130058E05Rik-201ENSMUST00000173856 1372 ntTSL 2 BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
Cdc40Q9DC48 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 Tlk2-202ENSMUST00000092537 2743 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 AC122379.1-201ENSMUST00000220658 355 ntTSL 3 BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 Fam89b-201ENSMUST00000099955 1197 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 Wnt5b-204ENSMUST00000178696 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 Picalm-205ENSMUST00000207225 3489 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Cdc40Q9DC48 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Cdc40Q9DC48 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms