Protein–RNA interactions for Protein: Q99MT2

Msh4, MutS protein homolog 4, mousemouse

Predictions only

Length 958 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh4Q99MT2 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh4Q99MT2 Fkbp1b-201ENSMUST00000020964 976 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh4Q99MT2 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC20.16■□□□□ 0.82
Msh4Q99MT2 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Msh4Q99MT2 Btbd19-209ENSMUST00000183310 1620 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Msh4Q99MT2 Gm11847-201ENSMUST00000125165 1119 ntBASIC20.15■□□□□ 0.82
Msh4Q99MT2 Tmem160-201ENSMUST00000019302 815 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msh4Q99MT2 Rps24-207ENSMUST00000224568 714 ntBASIC20.15■□□□□ 0.82
Msh4Q99MT2 Bex1-201ENSMUST00000058125 866 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msh4Q99MT2 Hnrnpa3-201ENSMUST00000090792 1140 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
Msh4Q99MT2 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msh4Q99MT2 Hcn4-201ENSMUST00000034889 6118 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Msh4Q99MT2 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Msh4Q99MT2 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.14■□□□□ 0.82
Msh4Q99MT2 Klf1-201ENSMUST00000067060 1530 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh4Q99MT2 4933431K14Rik-201ENSMUST00000195799 1352 ntBASIC20.14■□□□□ 0.81
Msh4Q99MT2 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Psmg1-202ENSMUST00000117044 807 ntTSL 5 BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
Msh4Q99MT2 Gsx1-201ENSMUST00000065382 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Suz12-206ENSMUST00000163272 4303 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Pgls-205ENSMUST00000143441 1062 ntTSL 3 BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Kcnip2-201ENSMUST00000026247 1203 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Ech1-201ENSMUST00000066264 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh4Q99MT2 1700016K19Rik-201ENSMUST00000066408 921 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Rufy1-201ENSMUST00000020643 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Hyal2-201ENSMUST00000010191 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
Msh4Q99MT2 Ubtf-213ENSMUST00000178839 4580 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Chrna7-201ENSMUST00000032738 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Cdkn2d-203ENSMUST00000215619 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Klf2-201ENSMUST00000067912 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Ssx2ip-203ENSMUST00000106151 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
Msh4Q99MT2 Prss50-201ENSMUST00000051097 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Ccnjl-201ENSMUST00000050574 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Gm9959-201ENSMUST00000068277 390 ntBASIC20.11■□□□□ 0.81
Msh4Q99MT2 Kcnip3-202ENSMUST00000088538 1296 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC20.11■□□□□ 0.81
Msh4Q99MT2 Gabbr1-209ENSMUST00000174456 1595 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 St3gal5-202ENSMUST00000114112 2439 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
Msh4Q99MT2 Vwc2-201ENSMUST00000056344 1350 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Cgrrf1-201ENSMUST00000068532 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Bub3-205ENSMUST00000208571 747 ntTSL 5 BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Hmg20b-203ENSMUST00000105324 1540 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Msto1-201ENSMUST00000107494 2093 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Dvl3-201ENSMUST00000003318 2498 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
Msh4Q99MT2 Txnrd2-212ENSMUST00000177856 1878 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
Msh4Q99MT2 Lrrc1-205ENSMUST00000183873 3121 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh4Q99MT2 Pgk1-201ENSMUST00000081593 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh4Q99MT2 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC20.09■□□□□ 0.81
Msh4Q99MT2 Gm45102-201ENSMUST00000207427 857 ntBASIC20.09■□□□□ 0.81
Msh4Q99MT2 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC20.09■□□□□ 0.81
Msh4Q99MT2 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh4Q99MT2 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
Msh4Q99MT2 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh4Q99MT2 Kctd20-201ENSMUST00000057174 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh4Q99MT2 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh4Q99MT2 Kctd9-201ENSMUST00000078053 3157 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Msh4Q99MT2 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.08■□□□□ 0.81
Msh4Q99MT2 D030056L22Rik-202ENSMUST00000062753 1677 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Msh4Q99MT2 Gm14117-201ENSMUST00000122417 843 ntBASIC20.08■□□□□ 0.81
Msh4Q99MT2 Bloc1s4-201ENSMUST00000071949 1273 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Msh4Q99MT2 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Msh4Q99MT2 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Mapkapk2-201ENSMUST00000016672 2854 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Gm9748-202ENSMUST00000194881 783 ntTSL 2 BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Msh4Q99MT2 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh4Q99MT2 1700034P13Rik-201ENSMUST00000181358 1343 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Msh4Q99MT2 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh4Q99MT2 Sin3b-203ENSMUST00000212095 1257 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Msh4Q99MT2 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Msh4Q99MT2 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Retrieved 100 of 76,532 protein–RNA pairs in 98.3 ms