Protein–RNA interactions for Protein: Q8R5L3

Vps39, Vam6/Vps39-like protein, mousemouse

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps39Q8R5L3 Kdm3b-204ENSMUST00000224715 2032 ntBASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Txnl4a-204ENSMUST00000145963 1756 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Hsf1-201ENSMUST00000072838 2018 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
Vps39Q8R5L3 Gm16286-205ENSMUST00000127234 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps39Q8R5L3 Gm5913-201ENSMUST00000119397 1399 ntBASIC20.77■□□□□ 0.92
Vps39Q8R5L3 Ints11-201ENSMUST00000030901 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps39Q8R5L3 Hoxd11-202ENSMUST00000142312 1111 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps39Q8R5L3 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.77■□□□□ 0.92
Vps39Q8R5L3 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC20.77■□□□□ 0.92
Vps39Q8R5L3 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps39Q8R5L3 Gm20634-201ENSMUST00000090779 2956 ntBASIC20.77■□□□□ 0.92
Vps39Q8R5L3 Bsg-201ENSMUST00000067036 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Vps39Q8R5L3 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC20.77■□□□□ 0.91
Vps39Q8R5L3 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Has1-201ENSMUST00000003762 2090 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Tmem192-203ENSMUST00000209852 1193 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Vps39Q8R5L3 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Mettl25-201ENSMUST00000046638 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Rtca-201ENSMUST00000000348 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Tpm1-211ENSMUST00000113695 1607 ntTSL 3 BASIC20.75■□□□□ 0.91
Vps39Q8R5L3 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Kif1bp-202ENSMUST00000159704 2622 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Tmem74b-201ENSMUST00000060196 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Vps39Q8R5L3 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 Gm8093-201ENSMUST00000128935 1892 ntBASIC20.73■□□□□ 0.91
Vps39Q8R5L3 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
Vps39Q8R5L3 6430573P05Rik-203ENSMUST00000195547 2457 ntBASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Vstm4-201ENSMUST00000053175 2745 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Mtm1-204ENSMUST00000101501 770 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Tbxa2r-202ENSMUST00000220312 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
Vps39Q8R5L3 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Zfp598-201ENSMUST00000047179 3286 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 E130208F15Rik-201ENSMUST00000098585 1733 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Rab24-201ENSMUST00000035242 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Igfbp7-201ENSMUST00000046746 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Frat1-201ENSMUST00000087155 2614 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
Vps39Q8R5L3 Pi4kb-207ENSMUST00000167008 1962 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Zfp639-202ENSMUST00000191783 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Hnrnpab-201ENSMUST00000074669 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Gm45371-201ENSMUST00000210723 459 ntTSL 3 BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Shisa6-201ENSMUST00000066679 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Hpca-209ENSMUST00000164649 1626 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Tex30-208ENSMUST00000147571 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Ubtf-201ENSMUST00000006754 3213 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Vps39Q8R5L3 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Marc1-202ENSMUST00000110992 2152 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Gm45444-201ENSMUST00000211394 898 ntBASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC20.69■□□□□ 0.9
Vps39Q8R5L3 Zfp287-205ENSMUST00000150336 1605 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 20.5 ms