Protein–RNA interactions for Protein: Q8R4G9

Chrna3, Neuronal acetylcholine receptor subunit alpha-3, mousemouse

Predictions only

Length 499 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chrna3Q8R4G9 Btbd17-201ENSMUST00000000206 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chrna3Q8R4G9 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Chrna3Q8R4G9 Cblc-202ENSMUST00000108449 1514 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Chrna3Q8R4G9 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Slc9a7-202ENSMUST00000115393 2152 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Smco4-203ENSMUST00000215907 994 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Chrna3Q8R4G9 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Chrna3Q8R4G9 Gm20387-201ENSMUST00000173609 1783 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Chrna3Q8R4G9 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Chrna3Q8R4G9 Gm42418-201ENSMUST00000182010 1831 ntBASIC20.39■□□□□ 0.86
Chrna3Q8R4G9 Gm9780-202ENSMUST00000184915 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chrna3Q8R4G9 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chrna3Q8R4G9 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.39■□□□□ 0.85
Chrna3Q8R4G9 Atp6v1f-201ENSMUST00000004396 703 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chrna3Q8R4G9 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
Chrna3Q8R4G9 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 St6galnac6-205ENSMUST00000113290 2402 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Ppp5c-201ENSMUST00000003183 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Morf4l1-201ENSMUST00000085248 1882 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Scarb1-202ENSMUST00000111390 2367 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Hif1a-203ENSMUST00000110464 1759 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Msl1-203ENSMUST00000107485 2091 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Chrna3Q8R4G9 Dus1l-209ENSMUST00000167023 1909 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Dus1l-201ENSMUST00000026151 1930 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Ing2-201ENSMUST00000080353 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Uchl5-206ENSMUST00000189936 1696 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Rab28-201ENSMUST00000031011 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Uap1-203ENSMUST00000111351 2287 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Chrna3Q8R4G9 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 E130307A14Rik-201ENSMUST00000129191 2011 ntTSL 3 BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 Rnf187-201ENSMUST00000094151 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 Mcoln1-201ENSMUST00000004683 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Chrna3Q8R4G9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Mpzl1-201ENSMUST00000068705 2171 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Nkx6-2-202ENSMUST00000106095 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 AC161180.2-201ENSMUST00000222567 1015 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Fastk-201ENSMUST00000030800 1893 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Chrna3Q8R4G9 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chrna3Q8R4G9 Ostc-201ENSMUST00000043937 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chrna3Q8R4G9 Ccdc74a-201ENSMUST00000056962 1273 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
Chrna3Q8R4G9 Tle1-205ENSMUST00000107337 2067 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Chrna3Q8R4G9 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chrna3Q8R4G9 Acsl6-209ENSMUST00000108904 2594 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Chrna3Q8R4G9 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Chrna3Q8R4G9 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Shisa8-201ENSMUST00000179269 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Ssr2-201ENSMUST00000035785 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC20.33■□□□□ 0.85
Chrna3Q8R4G9 Setd6-201ENSMUST00000034096 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chrna3Q8R4G9 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Chrna3Q8R4G9 Fkbp8-201ENSMUST00000075491 1698 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chrna3Q8R4G9 Hes7-201ENSMUST00000024543 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chrna3Q8R4G9 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chrna3Q8R4G9 Phactr2-202ENSMUST00000105543 2735 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Chrna3Q8R4G9 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Chrna3Q8R4G9 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Chrna3Q8R4G9 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chrna3Q8R4G9 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chrna3Q8R4G9 Rgs6-202ENSMUST00000161801 2141 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Chrna3Q8R4G9 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC20.31■□□□□ 0.84
Chrna3Q8R4G9 Maf1-201ENSMUST00000023212 1686 ntAPPRIS P2 TSL 1 (best) BASIC20.31■□□□□ 0.84
Chrna3Q8R4G9 Trim27-207ENSMUST00000223065 2046 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Chrna3Q8R4G9 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Rab42-201ENSMUST00000040411 761 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Kctd8-202ENSMUST00000087231 1860 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Jak2-202ENSMUST00000065796 5030 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Spire2-201ENSMUST00000010298 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Chrna3Q8R4G9 Gm4430-201ENSMUST00000192413 1943 ntBASIC20.29■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 104.2 ms