Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
Hmgb4Q6P8W9 Tead2-202ENSMUST00000097216 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
Hmgb4Q6P8W9 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC21.7■■□□□ 1.06
Hmgb4Q6P8W9 4930526A20Rik-202ENSMUST00000142461 1628 ntBASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Lipt2-201ENSMUST00000032967 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Gprc5b-204ENSMUST00000208394 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Bean1-202ENSMUST00000164076 2423 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Irf2bp1-201ENSMUST00000053713 2734 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
Hmgb4Q6P8W9 Nckap1-201ENSMUST00000028386 4469 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Hmgb4Q6P8W9 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC21.68■■□□□ 1.06
Hmgb4Q6P8W9 Ptpn12-201ENSMUST00000030556 3280 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Hmgb4Q6P8W9 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Sdsl-202ENSMUST00000052258 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Ergic1-206ENSMUST00000167662 2754 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
Hmgb4Q6P8W9 Tusc2-201ENSMUST00000010198 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Hmgb4Q6P8W9 Gm16286-201ENSMUST00000025463 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Hmgb4Q6P8W9 Slc35e2-203ENSMUST00000118607 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Hmgb4Q6P8W9 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC21.66■■□□□ 1.06
Hmgb4Q6P8W9 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC21.66■■□□□ 1.06
Hmgb4Q6P8W9 Krt72-201ENSMUST00000071104 1951 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
Hmgb4Q6P8W9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
Hmgb4Q6P8W9 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 1700051O22Rik-202ENSMUST00000195451 638 ntBASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 Kmt5b-201ENSMUST00000005518 1283 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 Kti12-201ENSMUST00000102738 1629 ntAPPRIS P1 BASIC21.65■■□□□ 1.06
Hmgb4Q6P8W9 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC21.64■■□□□ 1.06
Hmgb4Q6P8W9 Srsf2-201ENSMUST00000092404 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
Hmgb4Q6P8W9 A930032L01Rik-201ENSMUST00000195845 957 ntBASIC21.64■■□□□ 1.05
Hmgb4Q6P8W9 Appbp2os-202ENSMUST00000206972 447 ntBASIC21.64■■□□□ 1.05
Hmgb4Q6P8W9 Begain-203ENSMUST00000190647 2707 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
Hmgb4Q6P8W9 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
Hmgb4Q6P8W9 Dusp1-201ENSMUST00000025025 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
Hmgb4Q6P8W9 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 Lhx2-201ENSMUST00000000253 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 Kcnq5-205ENSMUST00000173058 2472 ntTSL 5 BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 Nfkbil1-201ENSMUST00000048994 1447 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
Hmgb4Q6P8W9 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC21.62■■□□□ 1.05
Hmgb4Q6P8W9 B4galt1-202ENSMUST00000108096 1413 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
Hmgb4Q6P8W9 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Tusc3-202ENSMUST00000169034 1262 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Sox8-202ENSMUST00000173447 928 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Alad-201ENSMUST00000030090 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 P2rx2-202ENSMUST00000112478 1632 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC21.61■■□□□ 1.05
Hmgb4Q6P8W9 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Hmgb4Q6P8W9 Golgb1-201ENSMUST00000023534 498 ntBASIC21.6■■□□□ 1.05
Hmgb4Q6P8W9 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC21.6■■□□□ 1.05
Hmgb4Q6P8W9 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Hmgb4Q6P8W9 Osbpl2-201ENSMUST00000040668 2805 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Hmgb4Q6P8W9 Rcc1l-201ENSMUST00000076228 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Hmgb4Q6P8W9 Eva1b-201ENSMUST00000052876 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
Hmgb4Q6P8W9 Atf5-201ENSMUST00000047356 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Hmgb4Q6P8W9 Cept1-203ENSMUST00000121231 2121 ntAPPRIS P3 TSL 5 BASIC21.59■■□□□ 1.05
Hmgb4Q6P8W9 Usp39-201ENSMUST00000070345 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Hmgb4Q6P8W9 Msrb1-201ENSMUST00000101800 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Hmgb4Q6P8W9 Bag1-201ENSMUST00000030125 1295 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
Hmgb4Q6P8W9 Rell2-201ENSMUST00000070709 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
Hmgb4Q6P8W9 Rhod-201ENSMUST00000048197 1344 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Hmgb4Q6P8W9 Zfp963-202ENSMUST00000154063 640 ntTSL 3 BASIC21.58■■□□□ 1.05
Hmgb4Q6P8W9 4930439D14Rik-201ENSMUST00000186765 359 ntBASIC21.58■■□□□ 1.05
Hmgb4Q6P8W9 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
Hmgb4Q6P8W9 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Pwwp2b-202ENSMUST00000172136 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Stard4-203ENSMUST00000119991 941 ntTSL 5 BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Gm12821-201ENSMUST00000120022 600 ntBASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Pkp2-203ENSMUST00000162150 1959 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
Hmgb4Q6P8W9 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Hmgb4Q6P8W9 Gm27454-201ENSMUST00000185090 204 ntBASIC21.56■■□□□ 1.04
Retrieved 100 of 76,532 protein–RNA pairs in 15.6 ms