Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Gltpd2-201ENSMUST00000057685 1216 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Rnf43Q5NCP0 Fabp3-201ENSMUST00000070532 823 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rnf43Q5NCP0 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Rnf43Q5NCP0 Zfp768-202ENSMUST00000205266 2513 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Gm14205-201ENSMUST00000138427 739 ntTSL 3 BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Tcte2-209ENSMUST00000143162 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Mtf2-202ENSMUST00000112626 1968 ntTSL 5 BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 AC158990.1-201ENSMUST00000221450 2016 ntBASIC21.26■□□□□ 0.99
Rnf43Q5NCP0 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Nsun2-208ENSMUST00000176485 2408 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Gm26881-201ENSMUST00000180426 593 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Gtf2e2-202ENSMUST00000170705 1634 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Becn1-217ENSMUST00000172233 1493 ntTSL 5 BASIC21.25■□□□□ 0.99
Rnf43Q5NCP0 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 Tarbp2-201ENSMUST00000023813 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 G630030J09Rik-201ENSMUST00000181958 2135 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 Rab3il1-202ENSMUST00000117641 2004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Rnf43Q5NCP0 Snrpa-201ENSMUST00000080356 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf43Q5NCP0 Dcaf15-201ENSMUST00000041367 2312 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf43Q5NCP0 Mir7075-201ENSMUST00000184187 82 ntBASIC21.23■□□□□ 0.99
Rnf43Q5NCP0 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf43Q5NCP0 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Rnf43Q5NCP0 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Ltk-201ENSMUST00000028759 3080 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Fbxl6-201ENSMUST00000023219 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Pigp-204ENSMUST00000113914 912 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Rnf43Q5NCP0 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Gm13448-201ENSMUST00000143469 1847 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Cdkn2a-202ENSMUST00000107131 895 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Rbp4-201ENSMUST00000025951 1243 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Ypel1-202ENSMUST00000090199 631 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Rnf43Q5NCP0 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
Rnf43Q5NCP0 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Hoxb9-201ENSMUST00000000010 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Rtn4-210ENSMUST00000170731 1272 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Slc22a17-208ENSMUST00000228119 2348 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Rnf43Q5NCP0 Tmem230-201ENSMUST00000028816 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf43Q5NCP0 Sc5d-202ENSMUST00000169609 1677 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf43Q5NCP0 Gm6569-201ENSMUST00000154520 811 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
Rnf43Q5NCP0 Gm10657-201ENSMUST00000193528 1031 ntBASIC21.19■□□□□ 0.98
Rnf43Q5NCP0 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf43Q5NCP0 Cadps-201ENSMUST00000067491 5421 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf43Q5NCP0 Rab26-201ENSMUST00000035797 1575 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Rnf43Q5NCP0 H3f3aos-201ENSMUST00000097448 2905 ntBASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Mta3-204ENSMUST00000112352 2674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Terf2-204ENSMUST00000133925 2666 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Marc1-201ENSMUST00000048462 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Paip2-205ENSMUST00000115737 713 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Gm43017-201ENSMUST00000198296 752 ntBASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Rnf43Q5NCP0 Med25-205ENSMUST00000207278 2287 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Rnf43Q5NCP0 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
Rnf43Q5NCP0 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rnf43Q5NCP0 AB124611-203ENSMUST00000173769 1188 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rnf43Q5NCP0 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Rnf43Q5NCP0 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC21.17■□□□□ 0.98
Rnf43Q5NCP0 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
Rnf43Q5NCP0 Ccnh-201ENSMUST00000022030 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Selenos-205ENSMUST00000206575 1157 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Cadps-203ENSMUST00000112658 5458 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Taf11-202ENSMUST00000114848 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Spsb3-202ENSMUST00000068508 2004 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Rnf43Q5NCP0 Acot3-202ENSMUST00000120927 1854 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms