Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC20.68■□□□□ 0.9
Shox2P70390 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC20.68■□□□□ 0.9
Shox2P70390 Cbx3-201ENSMUST00000031862 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Shox2P70390 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shox2P70390 Gatad1-201ENSMUST00000007559 2545 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shox2P70390 9130213A22Rik-201ENSMUST00000180487 1581 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shox2P70390 Pnrc1-201ENSMUST00000049357 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Shox2P70390 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shox2P70390 L3mbtl4-201ENSMUST00000093007 2445 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Shox2P70390 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shox2P70390 Ppp3cc-201ENSMUST00000078434 1970 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Shox2P70390 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 Btbd6-204ENSMUST00000221104 2085 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 Usp2-202ENSMUST00000065461 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC20.65■□□□□ 0.9
Shox2P70390 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC20.65■□□□□ 0.9
Shox2P70390 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 Nr2f1-201ENSMUST00000091458 3207 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Shox2P70390 Mecp2-201ENSMUST00000033770 1739 ntAPPRIS P4 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shox2P70390 Fgf16-201ENSMUST00000033581 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shox2P70390 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Shox2P70390 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Shox2P70390 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC20.64■□□□□ 0.89
Shox2P70390 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Mpnd-204ENSMUST00000149441 1701 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Klc1-204ENSMUST00000122300 2268 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Lsm12-201ENSMUST00000021297 2256 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Shox2P70390 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shox2P70390 AC131739.1-201ENSMUST00000221692 1245 ntBASIC20.63■□□□□ 0.89
Shox2P70390 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shox2P70390 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Shox2P70390 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
Shox2P70390 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Shox2P70390 Fam241b-203ENSMUST00000124615 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shox2P70390 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shox2P70390 Nkx2-3-201ENSMUST00000057178 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Shox2P70390 Jak2-201ENSMUST00000025705 4947 ntAPPRIS P1 TSL 5 BASIC20.61■□□□□ 0.89
Shox2P70390 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shox2P70390 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Shox2P70390 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
Shox2P70390 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Shox2P70390 Sybu-208ENSMUST00000228057 3026 ntAPPRIS ALT2 BASIC20.6■□□□□ 0.89
Shox2P70390 Rexo5-201ENSMUST00000033218 1966 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Shox2P70390 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Shox2P70390 Hnrnpa3-204ENSMUST00000111964 1654 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shox2P70390 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shox2P70390 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC20.6■□□□□ 0.89
Shox2P70390 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Shox2P70390 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shox2P70390 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shox2P70390 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC20.59■□□□□ 0.89
Shox2P70390 Mir3960-201ENSMUST00000198213 73 ntBASIC20.59■□□□□ 0.89
Shox2P70390 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shox2P70390 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shox2P70390 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shox2P70390 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
Shox2P70390 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Shox2P70390 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shox2P70390 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shox2P70390 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shox2P70390 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Shox2P70390 Gm3558-201ENSMUST00000163790 2055 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Shox2P70390 Tbc1d10a-201ENSMUST00000041042 1957 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Shox2P70390 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Shox2P70390 Runx2-211ENSMUST00000162629 1607 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Shox2P70390 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
Shox2P70390 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Shox2P70390 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Shox2P70390 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC20.57■□□□□ 0.88
Shox2P70390 Spag4-201ENSMUST00000038860 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shox2P70390 Bcl3-201ENSMUST00000120537 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shox2P70390 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Shox2P70390 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Shox2P70390 Cyp2r1-202ENSMUST00000119712 917 ntTSL 5 BASIC20.56■□□□□ 0.88
Shox2P70390 Gm45364-201ENSMUST00000210883 159 ntBASIC20.56■□□□□ 0.88
Shox2P70390 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Shox2P70390 Gm10125-205ENSMUST00000161921 1463 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Shox2P70390 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC20.55■□□□□ 0.88
Shox2P70390 Cacng7-201ENSMUST00000092891 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shox2P70390 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC20.55■□□□□ 0.88
Shox2P70390 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shox2P70390 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.55■□□□□ 0.88
Shox2P70390 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shox2P70390 Dnajc19-203ENSMUST00000117223 1695 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Shox2P70390 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Shox2P70390 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.55■□□□□ 0.88
Shox2P70390 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Shox2P70390 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms