Protein–RNA interactions for Protein: P35951

Ldlr, Low-density lipoprotein receptor, mousemouse

Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LdlrP35951 Bag1-203ENSMUST00000191273 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
LdlrP35951 Gm43592-201ENSMUST00000196922 1165 ntBASIC20.61■□□□□ 0.89
LdlrP35951 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LdlrP35951 5730488B01Rik-201ENSMUST00000192889 2311 ntBASIC20.61■□□□□ 0.89
LdlrP35951 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
LdlrP35951 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LdlrP35951 Dynll1-202ENSMUST00000112090 729 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
LdlrP35951 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LdlrP35951 Lsm4-201ENSMUST00000034311 925 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
LdlrP35951 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LdlrP35951 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LdlrP35951 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
LdlrP35951 Gsr-201ENSMUST00000033992 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
LdlrP35951 Tmx4-202ENSMUST00000110119 596 ntTSL 2 BASIC20.59■□□□□ 0.89
LdlrP35951 Nsd1-203ENSMUST00000224156 1149 ntBASIC20.59■□□□□ 0.89
LdlrP35951 Trak1-208ENSMUST00000210636 2197 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
LdlrP35951 Nphp1-202ENSMUST00000110357 2296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
LdlrP35951 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LdlrP35951 9230116N13Rik-201ENSMUST00000181746 2097 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
LdlrP35951 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
LdlrP35951 Gm44949-201ENSMUST00000206423 1450 ntBASIC20.58■□□□□ 0.89
LdlrP35951 Gm15820-201ENSMUST00000201566 728 ntBASIC20.58■□□□□ 0.89
LdlrP35951 Gm45102-201ENSMUST00000207427 857 ntBASIC20.58■□□□□ 0.89
LdlrP35951 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.89
LdlrP35951 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC20.58■□□□□ 0.89
LdlrP35951 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LdlrP35951 Btg3-201ENSMUST00000023570 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LdlrP35951 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
LdlrP35951 Snap91-203ENSMUST00000074501 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
LdlrP35951 Pmpca-202ENSMUST00000114093 1638 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
LdlrP35951 Gm15334-201ENSMUST00000131421 325 ntTSL 3 BASIC20.57■□□□□ 0.88
LdlrP35951 H2afj-202ENSMUST00000203982 577 ntAPPRIS ALT1 TSL 3 BASIC20.57■□□□□ 0.88
LdlrP35951 Kremen2-201ENSMUST00000046525 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
LdlrP35951 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LdlrP35951 Gm45444-201ENSMUST00000211394 898 ntBASIC20.56■□□□□ 0.88
LdlrP35951 Dhrs11-201ENSMUST00000047560 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LdlrP35951 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LdlrP35951 Smad6-201ENSMUST00000041029 2971 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
LdlrP35951 Fance-202ENSMUST00000114801 1751 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
LdlrP35951 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC20.55■□□□□ 0.88
LdlrP35951 Oaz2-201ENSMUST00000046490 1840 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
LdlrP35951 Magi2-201ENSMUST00000088516 4843 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
LdlrP35951 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
LdlrP35951 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
LdlrP35951 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LdlrP35951 0610009L18Rik-201ENSMUST00000143813 619 ntTSL 2 BASIC20.55■□□□□ 0.88
LdlrP35951 Gm28417-202ENSMUST00000185881 538 ntTSL 3 BASIC20.55■□□□□ 0.88
LdlrP35951 8430422M14Rik-201ENSMUST00000199608 822 ntBASIC20.55■□□□□ 0.88
LdlrP35951 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LdlrP35951 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
LdlrP35951 Cckbr-202ENSMUST00000181339 1326 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Snhg20-203ENSMUST00000182811 2153 ntBASIC20.54■□□□□ 0.88
LdlrP35951 Gse1-203ENSMUST00000120493 4610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
LdlrP35951 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Gadd45g-201ENSMUST00000021903 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
LdlrP35951 Sh2d4b-202ENSMUST00000096000 1597 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
LdlrP35951 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 Gsc2-201ENSMUST00000012279 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 Dgcr6-207ENSMUST00000151266 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 1700097N02Rik-201ENSMUST00000188852 845 ntTSL 3 BASIC20.53■□□□□ 0.88
LdlrP35951 Stbd1-201ENSMUST00000050952 1985 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LdlrP35951 Uap1-201ENSMUST00000027981 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 Gm9817-201ENSMUST00000054395 2531 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
LdlrP35951 Dedd2-202ENSMUST00000205271 1942 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
LdlrP35951 Cops7a-201ENSMUST00000032220 1817 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 Ccr10-201ENSMUST00000062759 1726 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
LdlrP35951 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LdlrP35951 AC124392.1-201ENSMUST00000225172 5324 ntBASIC20.52■□□□□ 0.88
LdlrP35951 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
LdlrP35951 Gabbr2-201ENSMUST00000107749 5750 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
LdlrP35951 March5-202ENSMUST00000112391 1293 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LdlrP35951 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC20.52■□□□□ 0.88
LdlrP35951 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
LdlrP35951 4430402I18Rik-201ENSMUST00000025872 2152 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
LdlrP35951 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LdlrP35951 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
LdlrP35951 Nkpd1-203ENSMUST00000214205 2309 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
LdlrP35951 Lzts2-202ENSMUST00000178087 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LdlrP35951 Trim47-201ENSMUST00000021120 2204 ntAPPRIS P4 TSL 1 (best) BASIC20.51■□□□□ 0.87
LdlrP35951 Tada1-201ENSMUST00000027846 2215 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LdlrP35951 Barhl1-203ENSMUST00000113849 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LdlrP35951 Lgals3-201ENSMUST00000142734 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
LdlrP35951 Nckap1-202ENSMUST00000111760 4597 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
LdlrP35951 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
LdlrP35951 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
LdlrP35951 Txnrd2-213ENSMUST00000178093 1785 ntTSL 5 BASIC20.5■□□□□ 0.87
LdlrP35951 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LdlrP35951 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
LdlrP35951 Kcnk15-202ENSMUST00000109396 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
LdlrP35951 1700001C19Rik-201ENSMUST00000061885 1622 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
LdlrP35951 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
LdlrP35951 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 70.5 ms