Protein–RNA interactions for Protein: O88609

Lmx1b, LIM homeobox transcription factor 1-beta, mousemouse

Predictions only

Length 395 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lmx1bO88609 Gm43034-201ENSMUST00000198678 1364 ntBASIC18.8■□□□□ 0.6
Lmx1bO88609 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Lmx1bO88609 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
Lmx1bO88609 Psip1-202ENSMUST00000107214 1973 ntTSL 5 BASIC18.79■□□□□ 0.6
Lmx1bO88609 Zc3h8-201ENSMUST00000028866 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lmx1bO88609 Ispd-204ENSMUST00000221452 1924 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lmx1bO88609 Cacybp-201ENSMUST00000014370 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lmx1bO88609 Gm21956-201ENSMUST00000179946 522 ntBASIC18.79■□□□□ 0.6
Lmx1bO88609 Gm13241-201ENSMUST00000094493 780 ntBASIC18.79■□□□□ 0.6
Lmx1bO88609 Atpaf1-203ENSMUST00000176047 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Lmx1bO88609 Homer2-201ENSMUST00000026922 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lmx1bO88609 Smim19-202ENSMUST00000163774 1435 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lmx1bO88609 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC18.78■□□□□ 0.6
Lmx1bO88609 A730098A19Rik-201ENSMUST00000188193 978 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Lmx1bO88609 Porcn-203ENSMUST00000089402 1839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lmx1bO88609 Alkal2-201ENSMUST00000067087 1509 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lmx1bO88609 Fndc4-201ENSMUST00000041266 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lmx1bO88609 Prpsap2-204ENSMUST00000168115 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Lmx1bO88609 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Lmx1bO88609 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC18.77■□□□□ 0.6
Lmx1bO88609 Etv4-212ENSMUST00000164750 2336 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lmx1bO88609 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
Lmx1bO88609 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lmx1bO88609 Rem2-201ENSMUST00000164697 1194 ntTSL 5 BASIC18.77■□□□□ 0.6
Lmx1bO88609 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lmx1bO88609 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.77■□□□□ 0.6
Lmx1bO88609 5930403N24Rik-204ENSMUST00000217338 337 ntTSL 2 BASIC18.77■□□□□ 0.6
Lmx1bO88609 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lmx1bO88609 Cnnm1-202ENSMUST00000223787 2931 ntAPPRIS ALT2 BASIC18.77■□□□□ 0.6
Lmx1bO88609 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Lmx1bO88609 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Lmx1bO88609 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Lmx1bO88609 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Lmx1bO88609 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC18.77■□□□□ 0.59
Lmx1bO88609 Stub1-201ENSMUST00000044911 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lmx1bO88609 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lmx1bO88609 Gm16253-201ENSMUST00000148290 550 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lmx1bO88609 Tcte2-201ENSMUST00000053376 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lmx1bO88609 Smox-207ENSMUST00000110186 2170 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Lmx1bO88609 Sec22c-202ENSMUST00000111560 2669 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lmx1bO88609 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 Sucla2-201ENSMUST00000022706 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 Gm26796-201ENSMUST00000181092 2276 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 Ankrd13c-202ENSMUST00000164582 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC18.75■□□□□ 0.59
Lmx1bO88609 Dctn3-203ENSMUST00000171641 885 ntTSL 3 BASIC18.75■□□□□ 0.59
Lmx1bO88609 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 Tmem230-202ENSMUST00000110163 1551 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
Lmx1bO88609 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 1810010H24Rik-202ENSMUST00000140447 1677 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Lmx1bO88609 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lmx1bO88609 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 Ndufs2-201ENSMUST00000013737 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 A830035O19Rik-201ENSMUST00000216147 1898 ntBASIC18.74■□□□□ 0.59
Lmx1bO88609 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 Eif2b3-203ENSMUST00000106448 1555 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Lmx1bO88609 Prr7-201ENSMUST00000046533 1359 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 H2-Q2-201ENSMUST00000074806 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 Psmd11-214ENSMUST00000173938 1626 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lmx1bO88609 Nle1-201ENSMUST00000103213 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lmx1bO88609 Tpm1-206ENSMUST00000113686 998 ntTSL 5 BASIC18.73■□□□□ 0.59
Lmx1bO88609 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lmx1bO88609 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC18.73■□□□□ 0.59
Lmx1bO88609 Gtpbp6-201ENSMUST00000077220 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lmx1bO88609 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lmx1bO88609 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lmx1bO88609 Gm38160-201ENSMUST00000193090 2499 ntBASIC18.73■□□□□ 0.59
Lmx1bO88609 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.73■□□□□ 0.59
Lmx1bO88609 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lmx1bO88609 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lmx1bO88609 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC18.72■□□□□ 0.59
Lmx1bO88609 Sumf1-206ENSMUST00000172188 723 ntTSL 5 BASIC18.72■□□□□ 0.59
Lmx1bO88609 P2rx2-203ENSMUST00000195985 2096 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lmx1bO88609 Lrrfip2-205ENSMUST00000196981 1839 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Lmx1bO88609 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.71■□□□□ 0.59
Lmx1bO88609 Adssl1-201ENSMUST00000021726 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lmx1bO88609 Rbm34-203ENSMUST00000212618 1509 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Lmx1bO88609 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lmx1bO88609 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lmx1bO88609 Ramp1-202ENSMUST00000165855 852 ntTSL 2 BASIC18.71■□□□□ 0.59
Lmx1bO88609 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC18.71■□□□□ 0.59
Lmx1bO88609 Ccdc88a-202ENSMUST00000109477 1716 ntTSL 2 BASIC18.71■□□□□ 0.59
Lmx1bO88609 Rap1a-201ENSMUST00000090678 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lmx1bO88609 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lmx1bO88609 Idh3a-205ENSMUST00000217484 2580 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lmx1bO88609 Pithd1-201ENSMUST00000105851 1700 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lmx1bO88609 Txn2-204ENSMUST00000109748 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lmx1bO88609 Gm12922-201ENSMUST00000120626 809 ntBASIC18.7■□□□□ 0.58
Lmx1bO88609 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.7■□□□□ 0.58
Lmx1bO88609 AC140930.3-201ENSMUST00000222935 274 ntBASIC18.7■□□□□ 0.58
Lmx1bO88609 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Lmx1bO88609 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lmx1bO88609 Gnas-206ENSMUST00000109084 1695 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lmx1bO88609 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lmx1bO88609 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 47.6 ms