Protein–RNA interactions for Protein: E9PWQ3

Col6a3, Collagen, type VI, alpha 3, mousemouse

Predictions only

Length 3,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a3E9PWQ3 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 Dusp28-201ENSMUST00000060913 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.53■■□□□ 1.04
Col6a3E9PWQ3 Pawr-201ENSMUST00000095313 1745 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col6a3E9PWQ3 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col6a3E9PWQ3 1700056E22Rik-201ENSMUST00000050306 967 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
Col6a3E9PWQ3 Mad2l2-201ENSMUST00000030860 1535 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Col6a3E9PWQ3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC21.52■■□□□ 1.04
Col6a3E9PWQ3 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
Col6a3E9PWQ3 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
Col6a3E9PWQ3 Lsm2-201ENSMUST00000007266 873 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
Col6a3E9PWQ3 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 A030001D20Rik-201ENSMUST00000211533 1542 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Gm6085-201ENSMUST00000182774 1470 ntBASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Kctd5-201ENSMUST00000017090 2443 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Actr3b-201ENSMUST00000088244 1712 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Col6a3E9PWQ3 Gm14486-201ENSMUST00000144704 644 ntTSL 3 BASIC21.49■■□□□ 1.03
Col6a3E9PWQ3 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.49■■□□□ 1.03
Col6a3E9PWQ3 Amer2-203ENSMUST00000225247 2662 ntBASIC21.49■■□□□ 1.03
Col6a3E9PWQ3 Auh-204ENSMUST00000120535 1647 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Col6a3E9PWQ3 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC21.49■■□□□ 1.03
Col6a3E9PWQ3 Timmdc1-201ENSMUST00000002925 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Col6a3E9PWQ3 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC21.48■■□□□ 1.03
Col6a3E9PWQ3 Gm4968-201ENSMUST00000071458 858 ntBASIC21.48■■□□□ 1.03
Col6a3E9PWQ3 Btbd6-201ENSMUST00000002880 2057 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
Col6a3E9PWQ3 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC21.47■■□□□ 1.03
Col6a3E9PWQ3 Gm13168-201ENSMUST00000121771 632 ntBASIC21.47■■□□□ 1.03
Col6a3E9PWQ3 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC21.47■■□□□ 1.03
Col6a3E9PWQ3 Gm7160-202ENSMUST00000188519 1027 ntBASIC21.47■■□□□ 1.03
Col6a3E9PWQ3 Zbtb7a-202ENSMUST00000117956 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Ppp2r2c-203ENSMUST00000201156 461 ntTSL 5 BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Rxrb-203ENSMUST00000173354 1743 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
Col6a3E9PWQ3 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col6a3E9PWQ3 Cisd1-201ENSMUST00000045887 1084 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col6a3E9PWQ3 Gpn2-201ENSMUST00000030661 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Col6a3E9PWQ3 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
Col6a3E9PWQ3 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col6a3E9PWQ3 Ntsr2-201ENSMUST00000111064 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Col6a3E9PWQ3 Ankrd9-207ENSMUST00000148765 1431 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
Col6a3E9PWQ3 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Col6a3E9PWQ3 Zxda-201ENSMUST00000117281 2621 ntBASIC21.44■■□□□ 1.02
Col6a3E9PWQ3 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
Col6a3E9PWQ3 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC21.43■■□□□ 1.02
Col6a3E9PWQ3 AC114678.1-201ENSMUST00000219640 622 ntTSL 3 BASIC21.43■■□□□ 1.02
Col6a3E9PWQ3 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC21.43■■□□□ 1.02
Col6a3E9PWQ3 Mrpl48-207ENSMUST00000146003 1625 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Col6a3E9PWQ3 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
Col6a3E9PWQ3 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col6a3E9PWQ3 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col6a3E9PWQ3 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col6a3E9PWQ3 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.42■■□□□ 1.02
Col6a3E9PWQ3 Cars2-201ENSMUST00000049461 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Col6a3E9PWQ3 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC21.41■■□□□ 1.02
Col6a3E9PWQ3 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC21.41■■□□□ 1.02
Col6a3E9PWQ3 Gm42778-201ENSMUST00000199644 553 ntBASIC21.41■■□□□ 1.02
Col6a3E9PWQ3 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC21.41■■□□□ 1.02
Col6a3E9PWQ3 Gm10209-201ENSMUST00000203397 1607 ntBASIC21.41■■□□□ 1.02
Col6a3E9PWQ3 Gm27253-201ENSMUST00000183670 367 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Col6a3E9PWQ3 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
Col6a3E9PWQ3 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Col6a3E9PWQ3 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.4■■□□□ 1.02
Col6a3E9PWQ3 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC21.4■■□□□ 1.02
Col6a3E9PWQ3 Gm26776-201ENSMUST00000180479 1872 ntTSL 5 BASIC21.39■■□□□ 1.02
Col6a3E9PWQ3 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC21.39■■□□□ 1.02
Col6a3E9PWQ3 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
Col6a3E9PWQ3 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC21.39■■□□□ 1.02
Col6a3E9PWQ3 Eri3-201ENSMUST00000037127 1719 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Col6a3E9PWQ3 AC117245.4-201ENSMUST00000217388 1646 ntBASIC21.39■■□□□ 1.01
Col6a3E9PWQ3 Tk2-205ENSMUST00000212275 1507 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.01
Col6a3E9PWQ3 March8-204ENSMUST00000123405 2102 ntTSL 5 BASIC21.39■■□□□ 1.01
Col6a3E9PWQ3 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
Col6a3E9PWQ3 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col6a3E9PWQ3 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Col6a3E9PWQ3 Ptf1a-201ENSMUST00000028068 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col6a3E9PWQ3 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Col6a3E9PWQ3 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.37■■□□□ 1.01
Col6a3E9PWQ3 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC21.37■■□□□ 1.01
Col6a3E9PWQ3 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Col6a3E9PWQ3 Gm10812-201ENSMUST00000099864 546 ntBASIC21.37■■□□□ 1.01
Col6a3E9PWQ3 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.37■■□□□ 1.01
Col6a3E9PWQ3 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a3E9PWQ3 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a3E9PWQ3 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a3E9PWQ3 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC21.36■■□□□ 1.01
Col6a3E9PWQ3 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col6a3E9PWQ3 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col6a3E9PWQ3 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC21.35■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 30.7 ms