Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Maf1-211ENSMUST00000161527 1743 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
Pcdhgb8A0A140LI48 Npas1-202ENSMUST00000210748 1959 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 AC115037.1-201ENSMUST00000223391 2173 ntBASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Gpr160-204ENSMUST00000108261 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Ggnbp2-202ENSMUST00000100686 2275 ntTSL 5 BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Ldb1-202ENSMUST00000056931 2295 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Ak2-201ENSMUST00000030583 986 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Vcpkmt-201ENSMUST00000058639 1027 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Fn1-208ENSMUST00000186940 1350 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Mpnd-209ENSMUST00000162883 1400 ntTSL 5 BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC18.62■□□□□ 0.57
Pcdhgb8A0A140LI48 Irf5-201ENSMUST00000004392 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Olfm1-204ENSMUST00000113920 2513 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Ears2-201ENSMUST00000033159 2046 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Pcdhgb8A0A140LI48 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Pcdhgb8A0A140LI48 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC18.6■□□□□ 0.57
Pcdhgb8A0A140LI48 Pkmyt1-201ENSMUST00000024701 2039 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Pcdhgb8A0A140LI48 Gm34220-201ENSMUST00000223001 2709 ntBASIC18.6■□□□□ 0.57
Pcdhgb8A0A140LI48 Tfg-201ENSMUST00000065515 1945 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Pcdhgb8A0A140LI48 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Pcdhgb8A0A140LI48 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Mapk12-201ENSMUST00000088827 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Gm15546-201ENSMUST00000122095 826 ntBASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Fam96b-203ENSMUST00000164884 918 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Vax1-201ENSMUST00000172821 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Atp10a-201ENSMUST00000168747 5419 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Ankra2-202ENSMUST00000091356 1949 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Pcdhgb8A0A140LI48 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Pcdhgb8A0A140LI48 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Pcdhgb8A0A140LI48 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Ptpn18-201ENSMUST00000027302 1559 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Dynlrb1-204ENSMUST00000150602 788 ntTSL 2 BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Mpv17l2-201ENSMUST00000038626 980 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Spns2-201ENSMUST00000045303 3241 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Uap1-202ENSMUST00000111350 2311 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Ubl7-208ENSMUST00000216841 1426 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
Pcdhgb8A0A140LI48 Znrf1-204ENSMUST00000171182 5466 ntTSL 3 BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Pantr1-205ENSMUST00000177136 1543 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Ppp1r14a-202ENSMUST00000207714 755 ntTSL 3 BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Ppp1r14a-201ENSMUST00000048187 950 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Tcte2-210ENSMUST00000148430 1839 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Mettl9-201ENSMUST00000033163 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Pcdhgb8A0A140LI48 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Gm20684-201ENSMUST00000176744 380 ntTSL 3 BASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Gm5522-201ENSMUST00000189483 1242 ntBASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Sds-204ENSMUST00000201684 1288 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
Pcdhgb8A0A140LI48 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Gm13238-201ENSMUST00000117655 780 ntBASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 1700016H13Rik-204ENSMUST00000120688 612 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Zfp346-203ENSMUST00000159278 1253 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Eva1b-203ENSMUST00000106152 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Mbp-208ENSMUST00000114676 1685 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Pcdhgb8A0A140LI48 Pus1-202ENSMUST00000031483 1814 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Tmem45b-201ENSMUST00000048050 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Mau2-206ENSMUST00000212451 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Ctxn1-201ENSMUST00000053252 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Zfp821-201ENSMUST00000034163 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Mbd3-201ENSMUST00000092295 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
Pcdhgb8A0A140LI48 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Pcdhgb8A0A140LI48 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Pcdhgb8A0A140LI48 Tmed2-201ENSMUST00000060226 2074 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Pcdhgb8A0A140LI48 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.52■□□□□ 0.55
Pcdhgb8A0A140LI48 Gm28731-201ENSMUST00000185564 1569 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 25 ms