Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Pcnx2-201ENSMUST00000047239 7236 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Cpsf3Q9QXK7 Zfp641-201ENSMUST00000023722 4212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cpsf3Q9QXK7 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Cpsf3Q9QXK7 Lzts3-202ENSMUST00000089561 4169 ntAPPRIS P3 TSL 5 BASIC13.15□□□□□ -0.3
Cpsf3Q9QXK7 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Cpsf3Q9QXK7 Prc1-211ENSMUST00000174199 2128 ntTSL 5 BASIC13.15□□□□□ -0.3
Cpsf3Q9QXK7 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.31
Cpsf3Q9QXK7 C3-201ENSMUST00000024988 5136 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Cpsf3Q9QXK7 Gzf1-201ENSMUST00000028928 4232 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Cpsf3Q9QXK7 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Irak1-203ENSMUST00000101458 2052 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Strada-201ENSMUST00000007444 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 BC030500-201ENSMUST00000062978 1605 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Pdyn-201ENSMUST00000028883 2386 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Spag1-201ENSMUST00000047348 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm11596-201ENSMUST00000105058 1079 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Sectm1a-204ENSMUST00000106120 1020 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm12997-201ENSMUST00000120207 640 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm14247-201ENSMUST00000120950 237 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Acat3-202ENSMUST00000160378 987 ntTSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Rpl7a-ps10-201ENSMUST00000190579 798 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm37666-201ENSMUST00000194110 866 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm17812-201ENSMUST00000204935 318 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm44711-201ENSMUST00000205414 1264 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Defb22-201ENSMUST00000028966 628 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Rpl7a-ps3-201ENSMUST00000090170 796 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Rpl30-201ENSMUST00000009039 570 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Rpl7a-ps5-201ENSMUST00000095218 807 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Asb18-202ENSMUST00000097656 788 ntTSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm7993-201ENSMUST00000200970 1384 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Pnp2-201ENSMUST00000095925 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Gm45278-201ENSMUST00000209650 2414 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Cyb5rl-203ENSMUST00000106758 2516 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Dcaf1-202ENSMUST00000159645 4945 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Cacna2d1-209ENSMUST00000199704 3861 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Fam118b-202ENSMUST00000063782 1662 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Ntrk2-204ENSMUST00000224259 3049 ntBASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Brwd1-202ENSMUST00000099502 8547 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Rfc2-201ENSMUST00000023867 4995 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Usp10-210ENSMUST00000144458 3726 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Arhgap24-206ENSMUST00000112854 2991 ntTSL 5 BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 Rab31-201ENSMUST00000070673 3476 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Cpsf3Q9QXK7 4930528D03Rik-203ENSMUST00000225577 1348 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Cd72-204ENSMUST00000107925 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm34370-201ENSMUST00000209385 1410 ntTSL 5 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Daglb-201ENSMUST00000045593 4651 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 4930554G24Rik-201ENSMUST00000126260 1603 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Rbl1-201ENSMUST00000029170 4862 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm43463-201ENSMUST00000195967 1803 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm20633-201ENSMUST00000176742 2831 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Zfp467-206ENSMUST00000114561 3619 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Spats2l-203ENSMUST00000164302 2088 ntTSL 5 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Pogk-202ENSMUST00000128861 4848 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Mapk8ip3-206ENSMUST00000120035 4125 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Ighv5-4-201ENSMUST00000103444 425 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm7722-201ENSMUST00000120646 741 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm12984-201ENSMUST00000145711 273 ntTSL 5 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Atp10d-206ENSMUST00000169617 761 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm2260-201ENSMUST00000184965 657 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm7003-201ENSMUST00000195089 312 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Gm18212-201ENSMUST00000211678 889 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 AC159747.1-201ENSMUST00000219903 265 ntBASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Phpt1-201ENSMUST00000039156 937 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Rpl18-201ENSMUST00000072503 679 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Rccd1-201ENSMUST00000047362 3336 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 E2f7-201ENSMUST00000073781 5473 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Rnf14-201ENSMUST00000072376 3038 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Mtmr10-201ENSMUST00000032736 5205 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Fyn-206ENSMUST00000136659 1910 ntTSL 5 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Lsm11-202ENSMUST00000129820 6453 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 A430108G06Rik-201ENSMUST00000153461 1428 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Cpsf3Q9QXK7 Msi2-203ENSMUST00000107909 6436 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 68.8 ms