Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Fmr1nb-203ENSMUST00000114647 679 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Gm12274-201ENSMUST00000120062 385 ntBASIC13.42□□□□□ -0.26
Col11a1Q61245 Gm12906-201ENSMUST00000154610 441 ntBASIC13.42□□□□□ -0.26
Col11a1Q61245 Kcnn2-205ENSMUST00000183850 3546 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 AC154305.2-201ENSMUST00000225813 901 ntBASIC13.42□□□□□ -0.26
Col11a1Q61245 AC164437.3-201ENSMUST00000228323 347 ntBASIC13.42□□□□□ -0.26
Col11a1Q61245 Psg23-201ENSMUST00000057810 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Rpl35a-201ENSMUST00000078804 491 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Diras2-201ENSMUST00000057442 4786 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC13.42□□□□□ -0.26
Col11a1Q61245 5330406M23Rik-201ENSMUST00000195672 2094 ntBASIC13.42□□□□□ -0.26
Col11a1Q61245 Bpifb4-201ENSMUST00000099181 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Gm9415-201ENSMUST00000200462 1321 ntBASIC13.42□□□□□ -0.26
Col11a1Q61245 Tmem251-201ENSMUST00000057416 3367 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Ino80c-204ENSMUST00000153360 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Nfatc1-204ENSMUST00000170905 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Col11a1Q61245 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC13.42□□□□□ -0.26
Col11a1Q61245 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC13.42□□□□□ -0.26
Col11a1Q61245 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
Col11a1Q61245 Fam131b-202ENSMUST00000095974 3992 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
Col11a1Q61245 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC13.42□□□□□ -0.26
Col11a1Q61245 Setd3-202ENSMUST00000109879 2387 ntTSL 3 BASIC13.42□□□□□ -0.26
Col11a1Q61245 Rdh10-201ENSMUST00000027053 3587 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Fam45a-202ENSMUST00000119633 2267 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Ptgdr2-201ENSMUST00000037261 2644 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm11502-201ENSMUST00000120917 1211 ntBASIC13.41□□□□□ -0.26
Col11a1Q61245 Gng5-ps-201ENSMUST00000120931 205 ntBASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm13026-201ENSMUST00000140113 608 ntTSL 5 BASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm13558-201ENSMUST00000140464 554 ntTSL 2 BASIC13.41□□□□□ -0.26
Col11a1Q61245 4732414G09Rik-202ENSMUST00000180695 408 ntTSL 3 BASIC13.41□□□□□ -0.26
Col11a1Q61245 CT573047.1-201ENSMUST00000223652 851 ntBASIC13.41□□□□□ -0.26
Col11a1Q61245 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Col11a1Q61245 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Col11a1Q61245 AC241621.2-201ENSMUST00000223991 2151 ntBASIC13.41□□□□□ -0.26
Col11a1Q61245 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Vps52-201ENSMUST00000025178 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Baiap2l1-201ENSMUST00000055190 3247 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC13.41□□□□□ -0.26
Col11a1Q61245 Creb3l4-201ENSMUST00000029547 1553 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Col15a1-203ENSMUST00000107730 1755 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Sema6c-202ENSMUST00000090823 4029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm29530-201ENSMUST00000187556 1956 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Bag6-201ENSMUST00000025250 3858 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
Col11a1Q61245 AC164107.1-201ENSMUST00000227730 2161 ntBASIC13.41□□□□□ -0.26
Col11a1Q61245 Frzb-201ENSMUST00000028389 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Atxn10-201ENSMUST00000163242 2425 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Dhx58-201ENSMUST00000017974 2412 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Tnfrsf9-203ENSMUST00000105671 1278 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm28038-201ENSMUST00000143119 378 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm45469-201ENSMUST00000210468 854 ntTSL 3 BASIC13.41□□□□□ -0.26
Col11a1Q61245 BC106175-201ENSMUST00000218578 695 ntTSL 5 BASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm2696-202ENSMUST00000220393 684 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
Col11a1Q61245 Tnfrsf9-202ENSMUST00000060901 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Gm15997-201ENSMUST00000202188 1491 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Spcs3-201ENSMUST00000067476 3466 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Npr3-201ENSMUST00000066529 6892 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Rtn4rl1-201ENSMUST00000102514 3525 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Foxh1-201ENSMUST00000037824 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
Col11a1Q61245 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col11a1Q61245 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Ncaph-201ENSMUST00000110387 2695 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 1520401A03Rik-205ENSMUST00000201734 2660 ntAPPRIS P5 TSL 5 BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm9796-201ENSMUST00000062249 2250 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Ptprj-204ENSMUST00000168621 7634 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm44414-201ENSMUST00000203660 2109 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm45546-201ENSMUST00000211053 2394 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Catsper4-201ENSMUST00000055892 1725 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Art5-202ENSMUST00000106934 843 ntTSL 5 BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm11500-201ENSMUST00000118237 601 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm15374-201ENSMUST00000119313 844 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm12712-201ENSMUST00000120676 801 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Mir1905-201ENSMUST00000122779 82 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Ndufb5-204ENSMUST00000127477 1079 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm17214-201ENSMUST00000164501 541 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Ly6e-207ENSMUST00000187606 735 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm30978-201ENSMUST00000211581 1066 ntTSL 5 BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm40761-201ENSMUST00000219123 1153 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 BC106175-202ENSMUST00000219344 1213 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Fth1-201ENSMUST00000025563 866 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm14123-201ENSMUST00000156345 2658 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Fam155a-201ENSMUST00000110969 3388 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Mxd3-201ENSMUST00000021941 1327 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
Col11a1Q61245 Kcnk13-204ENSMUST00000177549 3075 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
Col11a1Q61245 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
Col11a1Q61245 Gm13347-201ENSMUST00000120298 1353 ntBASIC13.4□□□□□ -0.26
Col11a1Q61245 Tas1r1-201ENSMUST00000030792 2863 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 34.1 ms