Protein–RNA interactions for Protein: Q4FZC9

Syne3, Nesprin-3, mousemouse

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne3Q4FZC9 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Syne3Q4FZC9 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Syne3Q4FZC9 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
Syne3Q4FZC9 Shank2-202ENSMUST00000105900 8169 ntTSL 5 BASIC13.02□□□□□ -0.33
Syne3Q4FZC9 Gm9881-201ENSMUST00000068783 3205 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Flnc-202ENSMUST00000101617 8939 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Gm44579-201ENSMUST00000142443 2064 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Sun2-201ENSMUST00000046259 3804 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 2310035C23Rik-210ENSMUST00000190501 3852 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Specc1-212ENSMUST00000202178 2932 ntTSL 5 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Ptbp1-216ENSMUST00000172282 3110 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Cd163l1-204ENSMUST00000209637 3210 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Gm12058-201ENSMUST00000118614 437 ntBASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Gm11964-201ENSMUST00000120982 444 ntBASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Klk11-202ENSMUST00000171458 1260 ntAPPRIS P3 TSL 2 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 AC132384.14-201ENSMUST00000219346 1147 ntBASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Morn2-202ENSMUST00000227729 656 ntBASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Acyp1-202ENSMUST00000065913 448 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Gm17383-201ENSMUST00000078739 1041 ntBASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Gpr31b-201ENSMUST00000091648 960 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Taar7e-201ENSMUST00000092656 1077 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Ccdc33-202ENSMUST00000098681 1093 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Rabep1-203ENSMUST00000100928 3860 ntTSL 5 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Gm11661-201ENSMUST00000121761 1327 ntBASIC13.01□□□□□ -0.33
Syne3Q4FZC9 AC149222.1-201ENSMUST00000154987 5188 ntAPPRIS P5 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Syt7-202ENSMUST00000076968 6624 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Zfp64-201ENSMUST00000087971 2438 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Ercc2-202ENSMUST00000108460 3485 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Dstyk-201ENSMUST00000045110 6282 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
Syne3Q4FZC9 Adcy9-201ENSMUST00000005719 4457 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Lrrc27-201ENSMUST00000016124 2113 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Hrg-201ENSMUST00000023590 1734 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Cadm1-203ENSMUST00000114547 4444 ntAPPRIS P4 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Usp20-201ENSMUST00000061544 1360 ntTSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Trav4d-3-201ENSMUST00000103592 331 ntAPPRIS P1 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Trav4d-4-201ENSMUST00000103600 354 ntAPPRIS P1 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Trav4n-3-201ENSMUST00000103618 331 ntAPPRIS P1 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Trav4n-4-201ENSMUST00000103627 354 ntAPPRIS P1 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Trav4-3-201ENSMUST00000103655 411 ntAPPRIS P1 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Trav4-4-dv10-201ENSMUST00000103663 361 ntAPPRIS P1 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Gm24231-201ENSMUST00000104315 133 ntBASIC13□□□□□ -0.33
Syne3Q4FZC9 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Mrps24-205ENSMUST00000154330 995 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Gm26956-201ENSMUST00000182176 986 ntBASIC13□□□□□ -0.33
Syne3Q4FZC9 Gm27516-201ENSMUST00000184237 98 ntBASIC13□□□□□ -0.33
Syne3Q4FZC9 Gm37201-201ENSMUST00000191845 523 ntBASIC13□□□□□ -0.33
Syne3Q4FZC9 Gm6007-201ENSMUST00000208170 823 ntBASIC13□□□□□ -0.33
Syne3Q4FZC9 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Hk2-201ENSMUST00000000642 5513 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Rgs6-222ENSMUST00000202210 3069 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
Syne3Q4FZC9 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Wwtr1-201ENSMUST00000029380 4697 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Atg7-210ENSMUST00000182793 2459 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC13□□□□□ -0.33
Syne3Q4FZC9 Pax6-203ENSMUST00000111082 3116 ntAPPRIS ALT1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Alg12-201ENSMUST00000043087 1793 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 5830417I10Rik-201ENSMUST00000135913 6190 ntBASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Ttc33-203ENSMUST00000118193 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Pink1-202ENSMUST00000105816 1465 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm12968-201ENSMUST00000138291 1454 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm19221-201ENSMUST00000221827 1477 ntBASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Cant1-206ENSMUST00000164927 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Atp13a1-201ENSMUST00000034326 3915 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Serpine1-201ENSMUST00000041388 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm13736-201ENSMUST00000119272 253 ntBASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Mypopos-201ENSMUST00000124897 560 ntTSL 3 BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm7008-202ENSMUST00000170019 402 ntTSL 2 BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm2546-201ENSMUST00000182630 991 ntBASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Ighv1-60-201ENSMUST00000195816 405 ntBASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm44364-201ENSMUST00000198368 141 ntBASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm45331-201ENSMUST00000209868 554 ntBASIC12.99□□□□□ -0.33
Syne3Q4FZC9 AC112680.3-201ENSMUST00000215297 488 ntTSL 3 BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Ifi30-202ENSMUST00000222087 981 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Jmjd8-201ENSMUST00000026832 2091 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Rftn2-202ENSMUST00000114428 2012 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Farsb-202ENSMUST00000170217 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
Syne3Q4FZC9 Psap-203ENSMUST00000165878 2564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 61.8 ms