Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Mrap2-201ENSMUST00000049457 1931 ntAPPRIS P1 TSL 3 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm5422-201ENSMUST00000050717 2721 ntBASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Skap1-202ENSMUST00000100519 1100 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Ighv1-80-201ENSMUST00000103547 351 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Ufc1-202ENSMUST00000111302 914 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 1810008B01Rik-201ENSMUST00000162325 829 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm20498-202ENSMUST00000164386 1043 ntTSL 2 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm27320-201ENSMUST00000184892 109 ntBASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm4034-201ENSMUST00000187674 480 ntBASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm12057-202ENSMUST00000189990 882 ntAPPRIS P1 TSL 5 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm37259-201ENSMUST00000193903 849 ntBASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 S100a3-204ENSMUST00000200290 509 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 1700011B04Rik-203ENSMUST00000220654 1033 ntTSL 5 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 1700011B04Rik-209ENSMUST00000221760 779 ntTSL 5 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Pex11b-201ENSMUST00000048766 1122 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Vmn1r197-201ENSMUST00000091734 897 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Kcnq3-201ENSMUST00000070256 11824 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Tmcc2-206ENSMUST00000142609 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm15326-202ENSMUST00000128198 1422 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 AC159314.1-201ENSMUST00000216917 3485 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Dip2a-202ENSMUST00000105417 6383 ntAPPRIS ALT2 TSL 5 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Asphd2-201ENSMUST00000031291 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gnb4-205ENSMUST00000155737 5997 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Sorl1-201ENSMUST00000060989 10715 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Cdc7-203ENSMUST00000117196 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Sorbs3-202ENSMUST00000227259 2481 ntAPPRIS ALT2 BASIC13.1□□□□□ -0.31
Upf3bQ3ULL6 Gm7224-201ENSMUST00000121359 2066 ntBASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Myo18a-220ENSMUST00000164334 5381 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 AC164702.1-201ENSMUST00000220135 2212 ntBASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Madd-209ENSMUST00000111371 5816 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Madd-210ENSMUST00000111372 5813 ntAPPRIS ALT2 TSL 2 BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Zfp783-204ENSMUST00000130490 4419 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Setdb2-205ENSMUST00000161459 2995 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Zufsp-201ENSMUST00000048222 2991 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Cr1l-201ENSMUST00000075451 1651 ntAPPRIS P2 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 S1pr1-201ENSMUST00000055676 3046 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Gm14109-201ENSMUST00000118814 309 ntBASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Tbc1d24-209ENSMUST00000201301 4261 ntTSL 5 BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 4930404N11Rik-201ENSMUST00000020456 691 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Gm18615-201ENSMUST00000222919 1031 ntBASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Taf1d-201ENSMUST00000034415 1148 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Rnf7-201ENSMUST00000057500 1232 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Sprr2a2-202ENSMUST00000090871 722 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Asrgl1-201ENSMUST00000049948 4195 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Hmg20a-204ENSMUST00000214869 1782 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Ndel1-202ENSMUST00000101017 1646 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Reps2-201ENSMUST00000101102 7630 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 Mgll-201ENSMUST00000089449 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
Upf3bQ3ULL6 H2-T10-202ENSMUST00000174382 1699 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
Upf3bQ3ULL6 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.31
Upf3bQ3ULL6 Zfp516-202ENSMUST00000171238 7725 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Zfp516-201ENSMUST00000071233 7703 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Trp63-204ENSMUST00000115305 1729 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Ttll12-201ENSMUST00000016901 3220 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 1700088E04Rik-212ENSMUST00000190959 1403 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Kif1a-210ENSMUST00000190723 6141 ntTSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Grid2ip-201ENSMUST00000010969 3459 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Tfe3-203ENSMUST00000101695 2989 ntTSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Gm23912-201ENSMUST00000104687 87 ntBASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Gm13061-201ENSMUST00000137962 664 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Hsbp1l1-201ENSMUST00000166219 1251 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 1700121N20Rik-201ENSMUST00000167922 1027 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Malat1-204ENSMUST00000173523 656 ntTSL 3 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Gm17586-201ENSMUST00000181502 908 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 2610016A17Rik-202ENSMUST00000186768 689 ntBASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 AC163667.3-201ENSMUST00000225774 222 ntBASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Pglyrp1-201ENSMUST00000032573 694 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Gtf2ird1-202ENSMUST00000074114 3330 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Rapgef3-203ENSMUST00000126854 4005 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Gm15082-201ENSMUST00000147045 1960 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Slc35f6-205ENSMUST00000196740 1972 ntTSL 5 BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Cpn1-201ENSMUST00000026210 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Upf3bQ3ULL6 Magee1-201ENSMUST00000033578 3550 ntAPPRIS P1 BASIC13.08□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 64.5 ms