Protein–RNA interactions for Protein: P53564

Cux1, Homeobox protein cut-like 1, mousemouse

Predictions only

Length 1,515 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cux1P53564 B430305J03Rik-201ENSMUST00000066298 3702 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
Cux1P53564 Acsf3-201ENSMUST00000015160 2206 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
Cux1P53564 Sema4b-201ENSMUST00000032754 3949 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Gm7002-201ENSMUST00000221386 2165 ntBASIC18.51■□□□□ 0.55
Cux1P53564 Gm14219-201ENSMUST00000120414 288 ntBASIC18.51■□□□□ 0.55
Cux1P53564 Gm13166-201ENSMUST00000123828 940 ntTSL 5 BASIC18.51■□□□□ 0.55
Cux1P53564 Gm13236-201ENSMUST00000153010 940 ntTSL 5 BASIC18.51■□□□□ 0.55
Cux1P53564 Mfsd11-212ENSMUST00000153084 1194 ntTSL 5 BASIC18.51■□□□□ 0.55
Cux1P53564 Lyzl4os-202ENSMUST00000156364 726 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Gm19015-201ENSMUST00000184002 1189 ntBASIC18.51■□□□□ 0.55
Cux1P53564 Rpain-201ENSMUST00000018593 1100 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Pbld1-206ENSMUST00000219687 788 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 AC102368.1-201ENSMUST00000227161 892 ntBASIC18.51■□□□□ 0.55
Cux1P53564 Gabpb1-205ENSMUST00000110424 2613 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Pex2-204ENSMUST00000165309 2038 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Cux1P53564 Plk2-201ENSMUST00000022212 2800 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Ephx1-201ENSMUST00000036928 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Cux1P53564 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cux1P53564 Gm26546-201ENSMUST00000181000 4276 ntTSL 5 BASIC18.5■□□□□ 0.55
Cux1P53564 Atp13a2-201ENSMUST00000037055 3956 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Gm25063-201ENSMUST00000104666 94 ntBASIC18.5■□□□□ 0.55
Cux1P53564 Nudt6-203ENSMUST00000108117 879 ntTSL 5 BASIC18.5■□□□□ 0.55
Cux1P53564 Gm13267-201ENSMUST00000142787 698 ntTSL 3 BASIC18.5■□□□□ 0.55
Cux1P53564 Gzmc-201ENSMUST00000015585 894 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Gm20420-201ENSMUST00000173178 639 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Gm44124-201ENSMUST00000204159 472 ntBASIC18.5■□□□□ 0.55
Cux1P53564 Gm4978-201ENSMUST00000071565 801 ntBASIC18.5■□□□□ 0.55
Cux1P53564 Gm16380-201ENSMUST00000077997 478 ntBASIC18.5■□□□□ 0.55
Cux1P53564 Naa10-202ENSMUST00000096316 892 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
Cux1P53564 Mta2-201ENSMUST00000096240 3135 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Rps6ka6-210ENSMUST00000137712 2410 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Cux1P53564 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC18.5■□□□□ 0.55
Cux1P53564 Pdp1-202ENSMUST00000095144 2506 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Cux1P53564 Ttc29-202ENSMUST00000109902 1416 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
Cux1P53564 Pisd-203ENSMUST00000120591 2491 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Cux1P53564 Dnmt3b-206ENSMUST00000103151 3956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Gm8899-201ENSMUST00000214635 1332 ntBASIC18.5■□□□□ 0.55
Cux1P53564 Rnf168-201ENSMUST00000014218 3932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cux1P53564 Dnmt3b-205ENSMUST00000103150 4070 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Cux1P53564 Armc6-201ENSMUST00000019679 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC18.49■□□□□ 0.55
Cux1P53564 Rhox3d-ps-201ENSMUST00000119181 825 ntBASIC18.49■□□□□ 0.55
Cux1P53564 Gm14441-201ENSMUST00000121960 540 ntBASIC18.49■□□□□ 0.55
Cux1P53564 Gm9089-201ENSMUST00000122027 526 ntBASIC18.49■□□□□ 0.55
Cux1P53564 Gm18968-201ENSMUST00000221319 862 ntBASIC18.49■□□□□ 0.55
Cux1P53564 AC147241.1-201ENSMUST00000222173 785 ntTSL 3 BASIC18.49■□□□□ 0.55
Cux1P53564 H3f3a-201ENSMUST00000081026 888 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
Cux1P53564 Gm23680-201ENSMUST00000083162 164 ntBASIC18.49■□□□□ 0.55
Cux1P53564 Snrpg-201ENSMUST00000089558 1055 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Ino80c-203ENSMUST00000141489 2207 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Rara-207ENSMUST00000164748 3129 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Hps1-209ENSMUST00000162061 2608 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Actn4-201ENSMUST00000068045 3877 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Tns1-222ENSMUST00000212888 5643 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Cux1P53564 Nub1-201ENSMUST00000068825 3269 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Hnrnpc-206ENSMUST00000227458 1683 ntAPPRIS ALT1 BASIC18.49■□□□□ 0.55
Cux1P53564 Ctdspl2-204ENSMUST00000110578 3386 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Six4-201ENSMUST00000043208 6402 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Gm15374-201ENSMUST00000119313 844 ntBASIC18.49■□□□□ 0.55
Cux1P53564 BB557941-201ENSMUST00000126549 1097 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Cux1P53564 Olfr755-ps1-201ENSMUST00000173568 910 ntBASIC18.49■□□□□ 0.55
Cux1P53564 Gm20400-201ENSMUST00000173695 665 ntTSL 3 BASIC18.49■□□□□ 0.55
Cux1P53564 Gm45410-201ENSMUST00000211331 1093 ntBASIC18.49■□□□□ 0.55
Cux1P53564 AC134869.4-202ENSMUST00000224350 837 ntBASIC18.49■□□□□ 0.55
Cux1P53564 AC118639.2-201ENSMUST00000226289 223 ntBASIC18.49■□□□□ 0.55
Cux1P53564 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Cux1P53564 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Enpp7-202ENSMUST00000106273 1408 ntAPPRIS ALT2 TSL 5 BASIC18.48■□□□□ 0.55
Cux1P53564 Gm45199-201ENSMUST00000207640 1507 ntBASIC18.48■□□□□ 0.55
Cux1P53564 Chtop-205ENSMUST00000107343 3118 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Orai2-201ENSMUST00000041048 3908 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Miga1-202ENSMUST00000073089 4965 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Dmrtc1b-203ENSMUST00000118842 1321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Canx-201ENSMUST00000020637 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Usp33-201ENSMUST00000026507 4153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Gad1-207ENSMUST00000148210 1021 ntTSL 5 BASIC18.48■□□□□ 0.55
Cux1P53564 1700007P06Rik-201ENSMUST00000160380 823 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Tle3-215ENSMUST00000162583 4299 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
Cux1P53564 Nrxn1-215ENSMUST00000173917 1439 ntTSL 2 BASIC18.48■□□□□ 0.55
Cux1P53564 Mrpl20-206ENSMUST00000185148 494 ntTSL 3 BASIC18.48■□□□□ 0.55
Cux1P53564 Gm29292-201ENSMUST00000186169 766 ntTSL 3 BASIC18.48■□□□□ 0.55
Cux1P53564 A930036K24Rik-201ENSMUST00000194146 1200 ntBASIC18.48■□□□□ 0.55
Cux1P53564 4930405N21Rik-201ENSMUST00000199950 1200 ntBASIC18.48■□□□□ 0.55
Cux1P53564 Crcp-204ENSMUST00000202163 931 ntTSL 2 BASIC18.48■□□□□ 0.55
Cux1P53564 Gm18059-201ENSMUST00000208073 580 ntBASIC18.48■□□□□ 0.55
Cux1P53564 Gm35625-201ENSMUST00000210416 316 ntTSL 3 BASIC18.48■□□□□ 0.55
Cux1P53564 Ttc34-201ENSMUST00000050220 3200 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Cux1P53564 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 44.5 ms