Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Vmn1r198-203ENSMUST00000226909 6259 ntAPPRIS P2 BASIC14.54□□□□□ -0.08
Ercc3P49135 Gm37513-201ENSMUST00000194830 2268 ntBASIC14.54□□□□□ -0.08
Ercc3P49135 Gm38378-201ENSMUST00000195153 2268 ntBASIC14.54□□□□□ -0.08
Ercc3P49135 Thap1-201ENSMUST00000036807 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ercc3P49135 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ercc3P49135 Prkar1b-202ENSMUST00000110889 2457 ntTSL 5 BASIC14.54□□□□□ -0.08
Ercc3P49135 Ptdss2-201ENSMUST00000026568 3624 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ercc3P49135 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ercc3P49135 Kcp-203ENSMUST00000101614 4885 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
Ercc3P49135 Man1a2-201ENSMUST00000008907 7969 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 Itga2b-201ENSMUST00000103086 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Sstr5-201ENSMUST00000051864 2733 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Tle1-201ENSMUST00000030095 2569 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 C1qtnf6-201ENSMUST00000023075 2402 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Gm20554-201ENSMUST00000177421 2352 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 AC125108.1-201ENSMUST00000218986 2330 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 Celf2-225ENSMUST00000183091 2177 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 Parp3-202ENSMUST00000112479 2030 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Brf2-201ENSMUST00000033877 1899 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Zmym3-205ENSMUST00000119699 1750 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 AC126444.1-201ENSMUST00000225938 1768 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 Adcyap1r1-203ENSMUST00000165786 1745 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 AC122197.2-201ENSMUST00000219196 1635 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Nyap1-202ENSMUST00000118326 4565 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Igf1-204ENSMUST00000121161 1344 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Gm14109-201ENSMUST00000118814 309 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 Gm4760-201ENSMUST00000119663 1030 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 Glmp-201ENSMUST00000001454 1017 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC14.53□□□□□ -0.08
Ercc3P49135 Gm5070-201ENSMUST00000177599 862 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 Gm4857-201ENSMUST00000192718 785 ntBASIC14.53□□□□□ -0.08
Ercc3P49135 Gm45892-201ENSMUST00000212627 273 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC14.53□□□□□ -0.08
Ercc3P49135 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC14.53□□□□□ -0.08
Ercc3P49135 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC14.53□□□□□ -0.08
Ercc3P49135 Stat5a-203ENSMUST00000107357 3605 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Crtc1-201ENSMUST00000076615 5683 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Otub2-202ENSMUST00000101094 3228 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Kif5a-201ENSMUST00000099172 6295 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Usp19-203ENSMUST00000166103 4473 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Ppp1r15a-201ENSMUST00000042105 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Ercc3P49135 Wars-201ENSMUST00000109848 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ercc3P49135 Gm27177-202ENSMUST00000183514 2703 ntBASIC14.52□□□□□ -0.08
Ercc3P49135 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ercc3P49135 Mrps26-202ENSMUST00000145614 4278 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ercc3P49135 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.08
Ercc3P49135 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ercc3P49135 Gm45011-201ENSMUST00000207620 2297 ntBASIC14.52□□□□□ -0.08
Ercc3P49135 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ercc3P49135 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ercc3P49135 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Ercc3P49135 Gm24934-201ENSMUST00000103764 111 ntBASIC14.52□□□□□ -0.09
Ercc3P49135 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Gm38000-201ENSMUST00000192390 1215 ntBASIC14.52□□□□□ -0.09
Ercc3P49135 Gm37933-201ENSMUST00000193964 981 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Gm44262-201ENSMUST00000204969 372 ntBASIC14.52□□□□□ -0.09
Ercc3P49135 Gm30459-201ENSMUST00000206203 1193 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 AC126253.1-202ENSMUST00000226732 835 ntBASIC14.52□□□□□ -0.09
Ercc3P49135 Dhrs2-201ENSMUST00000022820 1268 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Eaf2-201ENSMUST00000023537 849 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Ercc3P49135 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 H2-Q1-201ENSMUST00000073208 2024 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Sdf4-201ENSMUST00000050078 5177 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 D330041H03Rik-205ENSMUST00000181014 1903 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Ptger4-202ENSMUST00000120563 3312 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Car14-201ENSMUST00000036181 1709 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Mafk-202ENSMUST00000110836 3097 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Ercc3P49135 Rspo3-201ENSMUST00000092623 3085 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Spata18-203ENSMUST00000113548 1623 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.09
Ercc3P49135 Ppp2r2b-202ENSMUST00000117687 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Sh3kbp1-206ENSMUST00000112456 7317 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Synj2-202ENSMUST00000080283 4793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Ercc3P49135 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 Mob1a-201ENSMUST00000038658 4119 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 AC123857.2-201ENSMUST00000225756 1582 ntBASIC14.51□□□□□ -0.09
Ercc3P49135 Styxl1-201ENSMUST00000053906 1582 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 Sema4f-201ENSMUST00000000641 4086 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ercc3P49135 Cux2-202ENSMUST00000111752 8784 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC14.51□□□□□ -0.09
Ercc3P49135 4933411K16Rik-201ENSMUST00000164518 1380 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
Ercc3P49135 2810403A07Rik-201ENSMUST00000029696 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 Slc26a6-201ENSMUST00000098376 2402 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ercc3P49135 Trhr2-201ENSMUST00000044123 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Ercc3P49135 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
Ercc3P49135 Cgnl1-202ENSMUST00000121322 6541 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Ercc3P49135 Csrnp3-202ENSMUST00000112394 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 124.8 ms