Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Prdm5-202ENSMUST00000031976 2155 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Duoxa1-202ENSMUST00000110537 1506 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Gm13871-202ENSMUST00000107319 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Gm11757-202ENSMUST00000107321 1324 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC15.79■□□□□ 0.12
Col18a1P39061 Ddx10-201ENSMUST00000065630 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Alppl2-202ENSMUST00000188310 2016 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Ccdc187-201ENSMUST00000057224 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Speg-205ENSMUST00000113590 3393 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Gm1826-201ENSMUST00000118646 1162 ntBASIC15.79■□□□□ 0.12
Col18a1P39061 Gm27826-201ENSMUST00000175282 255 ntBASIC15.79■□□□□ 0.12
Col18a1P39061 Chn2-210ENSMUST00000203091 755 ntTSL 5 BASIC15.79■□□□□ 0.12
Col18a1P39061 Myl6-211ENSMUST00000219236 692 ntTSL 2 BASIC15.79■□□□□ 0.12
Col18a1P39061 Mok-203ENSMUST00000084974 1132 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Krtap3-3-201ENSMUST00000092700 736 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
Col18a1P39061 Ptger3-201ENSMUST00000041175 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Klc2-202ENSMUST00000113727 2874 ntTSL 5 BASIC15.79■□□□□ 0.12
Col18a1P39061 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Gm6024-201ENSMUST00000117850 1558 ntBASIC15.79■□□□□ 0.12
Col18a1P39061 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
Col18a1P39061 Gm4409-201ENSMUST00000130734 1919 ntTSL 2 BASIC15.79■□□□□ 0.12
Col18a1P39061 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
Col18a1P39061 Gm26732-201ENSMUST00000181807 2771 ntTSL 5 BASIC15.79■□□□□ 0.12
Col18a1P39061 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
Col18a1P39061 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Bap1-201ENSMUST00000022458 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Pard3-226ENSMUST00000162907 4682 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Slc13a3-201ENSMUST00000029208 3524 ntAPPRIS P2 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm28578-201ENSMUST00000187727 2698 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm45706-201ENSMUST00000213063 2136 ntBASIC15.78■□□□□ 0.12
Col18a1P39061 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC15.78■□□□□ 0.12
Col18a1P39061 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Lrrc75aos2-202ENSMUST00000128647 1227 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm15506-201ENSMUST00000148776 1133 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm11642-201ENSMUST00000150442 440 ntTSL 5 BASIC15.78■□□□□ 0.12
Col18a1P39061 Pet100-201ENSMUST00000156380 1193 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm9372-201ENSMUST00000168454 430 ntBASIC15.78■□□□□ 0.12
Col18a1P39061 Psme1-208ENSMUST00000174259 1112 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm29431-201ENSMUST00000189848 449 ntTSL 5 BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm8234-201ENSMUST00000198523 1107 ntBASIC15.78■□□□□ 0.12
Col18a1P39061 AC164556.1-201ENSMUST00000221318 751 ntBASIC15.78■□□□□ 0.12
Col18a1P39061 Eef1akmt1-201ENSMUST00000022518 880 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 5830437K03Rik-201ENSMUST00000199219 1379 ntBASIC15.78■□□□□ 0.12
Col18a1P39061 AC153524.2-201ENSMUST00000218351 1375 ntTSL 5 BASIC15.78■□□□□ 0.12
Col18a1P39061 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Hsp90b1-201ENSMUST00000020238 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Gm26525-201ENSMUST00000180666 3616 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Olfr1419-202ENSMUST00000213954 2918 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
Col18a1P39061 Eif4a2-223ENSMUST00000168891 2203 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Inpp4a-201ENSMUST00000027287 5691 ntAPPRIS P2 TSL 5 BASIC15.78■□□□□ 0.12
Col18a1P39061 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Pramel1-201ENSMUST00000037419 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
Col18a1P39061 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
Col18a1P39061 Ace-201ENSMUST00000001963 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Mrps36-203ENSMUST00000109333 701 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Gm3409-201ENSMUST00000110597 952 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
Col18a1P39061 Clps-202ENSMUST00000114785 369 ntTSL 2 BASIC15.77■□□□□ 0.12
Col18a1P39061 Mia-202ENSMUST00000121848 572 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Gm24294-201ENSMUST00000158295 277 ntBASIC15.77■□□□□ 0.12
Col18a1P39061 Ubl5-211ENSMUST00000162303 505 ntAPPRIS P1 TSL 2 BASIC15.77■□□□□ 0.12
Col18a1P39061 Gm43966-201ENSMUST00000203301 612 ntBASIC15.77■□□□□ 0.12
Col18a1P39061 Olfr1313-201ENSMUST00000099599 938 ntAPPRIS P1 BASIC15.77■□□□□ 0.12
Col18a1P39061 D330025C20Rik-201ENSMUST00000191632 3046 ntBASIC15.77■□□□□ 0.12
Col18a1P39061 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Map7d2-202ENSMUST00000112470 1350 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Rtf1-201ENSMUST00000028767 4664 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 BC004004-203ENSMUST00000149405 1402 ntAPPRIS P1 TSL 5 BASIC15.77■□□□□ 0.12
Col18a1P39061 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Txndc11-203ENSMUST00000118679 3523 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 AC165351.1-201ENSMUST00000219078 2020 ntBASIC15.77■□□□□ 0.12
Col18a1P39061 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
Col18a1P39061 Ubxn10-201ENSMUST00000105809 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col18a1P39061 Sfxn3-202ENSMUST00000084493 2843 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
Col18a1P39061 Pphln1-204ENSMUST00000165935 3473 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col18a1P39061 Ighv1-74-201ENSMUST00000103543 348 ntAPPRIS ALT2 BASIC15.77■□□□□ 0.11
Col18a1P39061 Snord23-201ENSMUST00000116828 109 ntBASIC15.77■□□□□ 0.11
Col18a1P39061 Gm15172-201ENSMUST00000118945 1046 ntBASIC15.77■□□□□ 0.11
Col18a1P39061 Gm14052-201ENSMUST00000121434 1031 ntBASIC15.77■□□□□ 0.11
Col18a1P39061 Gm5395-201ENSMUST00000121650 915 ntBASIC15.77■□□□□ 0.11
Col18a1P39061 Gm22344-201ENSMUST00000122642 278 ntBASIC15.77■□□□□ 0.11
Col18a1P39061 Gm16069-201ENSMUST00000131146 545 ntTSL 3 BASIC15.77■□□□□ 0.11
Col18a1P39061 C030013C21Rik-201ENSMUST00000133400 795 ntTSL 3 BASIC15.77■□□□□ 0.11
Col18a1P39061 Id2-203ENSMUST00000222667 958 ntBASIC15.77■□□□□ 0.11
Col18a1P39061 Polb-201ENSMUST00000033938 1201 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
Col18a1P39061 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC15.77■□□□□ 0.11
Col18a1P39061 Gm12912-201ENSMUST00000121596 1381 ntBASIC15.77■□□□□ 0.11
Col18a1P39061 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Col18a1P39061 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col18a1P39061 Maged2-202ENSMUST00000112697 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col18a1P39061 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
Col18a1P39061 Spsb1-201ENSMUST00000038562 3092 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Col18a1P39061 Josd1-201ENSMUST00000023061 3394 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
Retrieved 100 of 76,532 protein–RNA pairs in 69.2 ms