Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 4930516B21Rik-201ENSMUST00000181600 1195 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Gm27731-201ENSMUST00000185192 107 ntBASIC13.23□□□□□ -0.29
RaraP11416 Ggt5-203ENSMUST00000189972 648 ntTSL 3 BASIC13.23□□□□□ -0.29
RaraP11416 Sec14l4-201ENSMUST00000019512 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Gm31048-201ENSMUST00000196103 1061 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Gm42920-201ENSMUST00000196616 409 ntTSL 3 BASIC13.23□□□□□ -0.29
RaraP11416 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.23□□□□□ -0.29
RaraP11416 Adamts16-202ENSMUST00000109694 3378 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 5430400D12Rik-201ENSMUST00000181717 1690 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Chtop-201ENSMUST00000001043 3257 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Qrsl1-201ENSMUST00000020012 1981 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Tcf4-238ENSMUST00000201631 2660 ntTSL 5 BASIC13.23□□□□□ -0.29
RaraP11416 Gp2-202ENSMUST00000207887 1853 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Sfxn3-201ENSMUST00000062213 2966 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 F11-201ENSMUST00000034064 2240 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Bcs1l-203ENSMUST00000113733 1488 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
RaraP11416 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Xpnpep1-209ENSMUST00000183108 4078 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Jak3-203ENSMUST00000110013 4009 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Jak3-201ENSMUST00000051995 4019 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Rasgef1b-203ENSMUST00000146396 3339 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Id1-202ENSMUST00000109824 1160 ntAPPRIS ALT2 BASIC13.22□□□□□ -0.29
RaraP11416 Fam71f2-201ENSMUST00000115286 1180 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Gm13875-201ENSMUST00000120162 282 ntBASIC13.22□□□□□ -0.29
RaraP11416 Gm13316-201ENSMUST00000140537 691 ntBASIC13.22□□□□□ -0.29
RaraP11416 AI480526-203ENSMUST00000160099 1017 ntTSL 2 BASIC13.22□□□□□ -0.29
RaraP11416 Gm16379-201ENSMUST00000161469 348 ntBASIC13.22□□□□□ -0.29
RaraP11416 D930030I03Rik-201ENSMUST00000180735 920 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Gm8762-201ENSMUST00000193486 339 ntBASIC13.22□□□□□ -0.29
RaraP11416 Hbb-bs-201ENSMUST00000023934 628 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Olfr223-201ENSMUST00000061293 1111 ntAPPRIS P1 BASIC13.22□□□□□ -0.29
RaraP11416 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC13.22□□□□□ -0.29
RaraP11416 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Rab3a-203ENSMUST00000110092 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Mip-201ENSMUST00000026455 2144 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Ctnnbl1-201ENSMUST00000029178 2442 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Ildr1-201ENSMUST00000023617 3042 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 1700047I17Rik2-201ENSMUST00000177978 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Cdrt4os1-201ENSMUST00000130177 2090 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Hk1-205ENSMUST00000130422 2916 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
RaraP11416 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Ptchd3-201ENSMUST00000036690 3194 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
RaraP11416 Tonsl-207ENSMUST00000168185 4235 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Bpifb6-201ENSMUST00000088955 1669 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Arfgap1-201ENSMUST00000029092 2714 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 4833422M21Rik-202ENSMUST00000181252 2410 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Plcd1-201ENSMUST00000010804 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Nicn1-201ENSMUST00000035227 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Egfl7-201ENSMUST00000100290 1348 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Gm20687-203ENSMUST00000185121 4242 ntTSL 2 BASIC13.21□□□□□ -0.29
RaraP11416 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.21□□□□□ -0.29
RaraP11416 Ighv7-3-201ENSMUST00000103461 361 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
RaraP11416 Sgsm1-203ENSMUST00000112324 1102 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Gm11658-201ENSMUST00000120913 1008 ntBASIC13.21□□□□□ -0.29
RaraP11416 Gm14999-201ENSMUST00000121039 624 ntBASIC13.21□□□□□ -0.29
RaraP11416 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC13.21□□□□□ -0.29
RaraP11416 Med9os-203ENSMUST00000146334 527 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Dcdc2b-203ENSMUST00000179209 864 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
RaraP11416 Gm2467-201ENSMUST00000182266 1010 ntBASIC13.21□□□□□ -0.29
RaraP11416 Gm6981-201ENSMUST00000182467 1008 ntBASIC13.21□□□□□ -0.29
RaraP11416 AC158605.1-202ENSMUST00000217860 540 ntTSL 2 BASIC13.21□□□□□ -0.29
RaraP11416 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.29
RaraP11416 Tnfrsf17-201ENSMUST00000023140 815 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Banp-210ENSMUST00000173254 1521 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
RaraP11416 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC13.21□□□□□ -0.29
RaraP11416 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Sppl2b-211ENSMUST00000220091 3629 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Styxl1-208ENSMUST00000178515 1651 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Brd2-202ENSMUST00000095347 2617 ntTSL 5 BASIC13.21□□□□□ -0.3
RaraP11416 Tmem92-203ENSMUST00000162809 1437 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Arhgap30-201ENSMUST00000056449 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Akp-ps1-201ENSMUST00000188050 1600 ntBASIC13.21□□□□□ -0.3
RaraP11416 Glp2r-202ENSMUST00000051765 4873 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
RaraP11416 Abhd1-202ENSMUST00000201125 1352 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Ggt6-201ENSMUST00000076443 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Xkr5-201ENSMUST00000055503 3176 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Nrros-208ENSMUST00000143682 3577 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 H2-T22-203ENSMUST00000080015 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Gm36635-201ENSMUST00000221152 1332 ntTSL 5 BASIC13.2□□□□□ -0.3
RaraP11416 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Aldh3a2-202ENSMUST00000074127 3091 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.2□□□□□ -0.3
RaraP11416 Dctn4-202ENSMUST00000223590 1530 ntBASIC13.2□□□□□ -0.3
RaraP11416 Gm37542-201ENSMUST00000192563 2832 ntBASIC13.2□□□□□ -0.3
RaraP11416 Atp8a2-202ENSMUST00000131670 1725 ntTSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms