Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Usp24-204ENSMUST00000165709 10594 ntAPPRIS ALT2 TSL 5 BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Pigq-201ENSMUST00000026823 3173 ntAPPRIS P3 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Il12rb1-201ENSMUST00000000808 2873 ntAPPRIS P2 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Gm26588-202ENSMUST00000181355 2538 ntTSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Plin3-201ENSMUST00000019726 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.28
Trim54Q9ERP3 Klhdc7b-201ENSMUST00000166926 1818 ntAPPRIS P2 BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Pax6-202ENSMUST00000090397 3069 ntAPPRIS ALT1 TSL 5 BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Pcdha2-202ENSMUST00000195590 4645 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Afmid-201ENSMUST00000073388 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Vcpip1-201ENSMUST00000057438 9749 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Mcm8-201ENSMUST00000028831 3179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Gm45253-201ENSMUST00000210694 2076 ntTSL 5 BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Gm15515-201ENSMUST00000117827 822 ntBASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Gsto2-202ENSMUST00000120645 1277 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Tmem74bos-201ENSMUST00000137422 390 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Gm15884-201ENSMUST00000143765 643 ntTSL 3 BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Mir1943-201ENSMUST00000158276 73 ntBASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Gm24514-201ENSMUST00000174961 285 ntBASIC13.29□□□□□ -0.28
Trim54Q9ERP3 2810405F17Rik-201ENSMUST00000189334 1117 ntBASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 D530033B14Rik-202ENSMUST00000206282 216 ntBASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Thegl-201ENSMUST00000031161 1719 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Gpr35-205ENSMUST00000186298 2647 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Nox3-201ENSMUST00000115800 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Gm45743-201ENSMUST00000212701 2795 ntBASIC13.29□□□□□ -0.28
Trim54Q9ERP3 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Mapt-204ENSMUST00000106992 5253 ntAPPRIS ALT2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Zfp219-202ENSMUST00000166169 3017 ntAPPRIS P2 TSL 1 (best) BASIC13.29□□□□□ -0.28
Trim54Q9ERP3 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 5930412G12Rik-203ENSMUST00000134673 2087 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 AC091764.2-201ENSMUST00000218190 1590 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Fam160a2-202ENSMUST00000074686 3212 ntAPPRIS ALT2 TSL 5 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Adam32-201ENSMUST00000119720 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Uchl1os-201ENSMUST00000152002 1685 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Fcrls-201ENSMUST00000090986 2273 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Ildr1-202ENSMUST00000089618 2850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Eme2-201ENSMUST00000119848 5226 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Dcst1-201ENSMUST00000070820 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Amer2-201ENSMUST00000022561 10506 ntAPPRIS P1 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Hnf1b-202ENSMUST00000108113 2376 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Lmntd1-201ENSMUST00000111706 2350 ntAPPRIS ALT2 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm22133-201ENSMUST00000102082 109 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm9062-201ENSMUST00000117712 727 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm6335-201ENSMUST00000118081 1194 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm7816-201ENSMUST00000119884 1194 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm11450-201ENSMUST00000121144 333 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm15542-201ENSMUST00000121585 1194 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm14760-201ENSMUST00000121831 999 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Bcas3os2-201ENSMUST00000134305 661 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Gm43962-201ENSMUST00000203898 190 ntBASIC13.28□□□□□ -0.28
Trim54Q9ERP3 5330413P13Rik-205ENSMUST00000210961 913 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Sgf29-201ENSMUST00000032956 1312 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Rnf133-201ENSMUST00000063548 1308 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Corin-201ENSMUST00000005352 4862 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Aldh9a1-201ENSMUST00000028004 2835 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 S1pr3-201ENSMUST00000087978 4463 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Fancc-202ENSMUST00000099444 2288 ntTSL 5 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 AL670603.1-201ENSMUST00000216692 1535 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Myc-205ENSMUST00000161976 2338 ntTSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Myc-201ENSMUST00000022971 2338 ntAPPRIS ALT1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Asb10-201ENSMUST00000048302 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Pfas-201ENSMUST00000021282 6373 ntAPPRIS P1 TSL 5 BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Phf13-201ENSMUST00000055688 3205 ntAPPRIS P1 TSL 1 (best) BASIC13.28□□□□□ -0.28
Trim54Q9ERP3 Nol4-206ENSMUST00000164186 2622 ntAPPRIS P4 TSL 5 BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Nub1-202ENSMUST00000197407 3546 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Mmgt2-203ENSMUST00000129162 1828 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Prnd-203ENSMUST00000110171 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Stx11-202ENSMUST00000163425 4032 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Fbxl12-202ENSMUST00000086459 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
Trim54Q9ERP3 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Trav13-1-201ENSMUST00000103651 331 ntAPPRIS P1 BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Prdx1-202ENSMUST00000106470 877 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Immp2l-202ENSMUST00000132121 1147 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Arid3b-204ENSMUST00000164010 1259 ntTSL 5 BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Gm21057-202ENSMUST00000206111 512 ntTSL 2 BASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Gm14267-206ENSMUST00000226870 1209 ntBASIC13.27□□□□□ -0.29
Trim54Q9ERP3 Nudt7-201ENSMUST00000066514 935 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
Retrieved 100 of 76,532 protein–RNA pairs in 53.2 ms