Protein–RNA interactions for Protein: Q99LM2

Cdk5rap3, CDK5 regulatory subunit-associated protein 3, mousemouse

Predictions only

Length 503 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdk5rap3Q99LM2 Ikzf4-204ENSMUST00000222067 2688 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Dusp13-202ENSMUST00000119866 1342 ntTSL 5 BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Kdm2b-203ENSMUST00000086200 4999 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Col6a2-201ENSMUST00000001181 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Arhgap4-203ENSMUST00000114405 6299 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Slc22a5-201ENSMUST00000019044 3062 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Gm11591-201ENSMUST00000120063 702 ntBASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Mecp2-204ENSMUST00000140399 1168 ntTSL 5 BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Gm8738-201ENSMUST00000172606 329 ntBASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Gm29856-201ENSMUST00000191905 1257 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Colca2-202ENSMUST00000215038 1269 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 4930518P08Rik-201ENSMUST00000221281 1187 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Rab10os-203ENSMUST00000178074 4006 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 9330199G10Rik-202ENSMUST00000221607 1728 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Ms4a15-201ENSMUST00000087923 1713 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Aldoa-203ENSMUST00000106348 1460 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 1700030J22Rik-202ENSMUST00000213068 1482 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Slc34a3-201ENSMUST00000006638 2183 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Plcb2-206ENSMUST00000159756 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Cib2-201ENSMUST00000041901 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Gemin4-201ENSMUST00000102500 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
Cdk5rap3Q99LM2 Wdr59-202ENSMUST00000038193 5083 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Eya1-202ENSMUST00000080664 3426 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Mark4-201ENSMUST00000085715 3886 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Dab2ip-201ENSMUST00000065001 6392 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Zfp568-201ENSMUST00000074322 2016 ntAPPRIS P3 TSL 5 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Ash2l-210ENSMUST00000166078 2234 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Upk3b-201ENSMUST00000062606 3530 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Timd2-201ENSMUST00000055102 1941 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Elovl1-203ENSMUST00000102673 1248 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm13736-201ENSMUST00000119272 253 ntBASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm9431-201ENSMUST00000119765 1051 ntBASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Naa60-209ENSMUST00000175809 279 ntTSL 5 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Sox2ot-207ENSMUST00000196987 727 ntTSL 3 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm44958-201ENSMUST00000203734 736 ntBASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm44934-201ENSMUST00000208941 238 ntTSL 5 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Gm4935-201ENSMUST00000221316 1198 ntBASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 AC125209.1-201ENSMUST00000225812 766 ntBASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Faap100-201ENSMUST00000026448 3193 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 4933434E20Rik-206ENSMUST00000160640 2510 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Scrn3-202ENSMUST00000112050 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Galnt11-202ENSMUST00000114950 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Esr1-201ENSMUST00000067086 4344 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Mageb10-ps-201ENSMUST00000119697 1407 ntBASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Hars2-201ENSMUST00000019287 2002 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Oraov1-204ENSMUST00000128057 2231 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Tfdp2-205ENSMUST00000179416 2408 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Zdhhc20-205ENSMUST00000226057 2179 ntAPPRIS ALT2 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Nanos2-201ENSMUST00000063563 1563 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Klk1b16-201ENSMUST00000005933 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
Cdk5rap3Q99LM2 Poll-201ENSMUST00000026239 2324 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Strc-201ENSMUST00000038389 5756 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Afg3l1-201ENSMUST00000001520 4227 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Brsk1-202ENSMUST00000120836 2867 ntTSL 5 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Fbn2-201ENSMUST00000025497 10480 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Dlk1-204ENSMUST00000109843 1300 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Gm38100-201ENSMUST00000194391 1329 ntAPPRIS ALT2 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Myf5-201ENSMUST00000000445 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Ccdc32-201ENSMUST00000036470 1870 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Pcdhgb5-201ENSMUST00000192535 4670 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Cyp26b1-204ENSMUST00000204146 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Stau2-214ENSMUST00000162007 2964 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Gm16191-202ENSMUST00000148464 484 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Mb-201ENSMUST00000019037 966 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Gm38230-201ENSMUST00000193572 1159 ntBASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Gm44702-201ENSMUST00000209194 592 ntTSL 3 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Cfc1-201ENSMUST00000027298 1040 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 n-R5s195-201ENSMUST00000082891 119 ntBASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Olfr1428-201ENSMUST00000087824 945 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Hmgcs2-202ENSMUST00000120541 2524 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Lpar1-205ENSMUST00000107575 3421 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC12.68□□□□□ -0.38
Cdk5rap3Q99LM2 9330182L06Rik-204ENSMUST00000134991 4115 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms