Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Wdr66-202ENSMUST00000121964 4873 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Msx1P13297 Arnt-203ENSMUST00000102749 2699 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Gm42957-201ENSMUST00000137564 3624 ntAPPRIS P1 TSL 2 BASIC11.84□□□□□ -0.51
Msx1P13297 Npc2-201ENSMUST00000021668 3299 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Trpv4-204ENSMUST00000112222 2475 ntTSL 5 BASIC11.84□□□□□ -0.51
Msx1P13297 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Msx1P13297 Dhx57-202ENSMUST00000086555 5077 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 9930014A18Rik-201ENSMUST00000180730 3074 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Nfib-203ENSMUST00000107245 9116 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Gm38385-201ENSMUST00000194454 2351 ntBASIC11.84□□□□□ -0.51
Msx1P13297 Pga5-201ENSMUST00000025647 1417 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Bak1-202ENSMUST00000078691 2387 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Gas7-201ENSMUST00000041611 2968 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Gm43796-201ENSMUST00000202853 2012 ntAPPRIS P1 TSL 5 BASIC11.84□□□□□ -0.51
Msx1P13297 Sp3-202ENSMUST00000102689 4181 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Rapgef6-202ENSMUST00000101206 5864 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Msx1P13297 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Vmp1-201ENSMUST00000018315 2787 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Otx1-201ENSMUST00000006071 2789 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Tmem17-201ENSMUST00000059319 1568 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Msx1P13297 Cd109-201ENSMUST00000093812 5860 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.51
Msx1P13297 Sstr5-202ENSMUST00000165183 2581 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Gm19221-201ENSMUST00000221827 1477 ntBASIC11.83□□□□□ -0.52
Msx1P13297 Snx14-207ENSMUST00000174806 3082 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Msx1P13297 Gm26593-201ENSMUST00000181848 1970 ntTSL 5 BASIC11.83□□□□□ -0.52
Msx1P13297 Nkx6-3-201ENSMUST00000071588 2238 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Efemp2-209ENSMUST00000167371 1382 ntTSL 5 BASIC11.83□□□□□ -0.52
Msx1P13297 Gm38325-201ENSMUST00000194507 1377 ntBASIC11.83□□□□□ -0.52
Msx1P13297 Brd2-201ENSMUST00000025193 4374 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Tpm3-rs7-201ENSMUST00000072359 2147 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Msx1P13297 Txlng-203ENSMUST00000112315 2525 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Shisa9-202ENSMUST00000170672 3421 ntAPPRIS P4 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Ptpn14-201ENSMUST00000027898 2666 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Apoc1-202ENSMUST00000108451 532 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Gm11531-201ENSMUST00000117614 555 ntBASIC11.83□□□□□ -0.52
Msx1P13297 Lamr1-ps1-201ENSMUST00000119759 874 ntBASIC11.83□□□□□ -0.52
Msx1P13297 Gm11961-202ENSMUST00000141157 760 ntTSL 3 BASIC11.83□□□□□ -0.52
Msx1P13297 Gm22764-201ENSMUST00000158370 92 ntBASIC11.83□□□□□ -0.52
Msx1P13297 Gm23363-201ENSMUST00000175024 79 ntBASIC11.83□□□□□ -0.52
Msx1P13297 Rhoc-204ENSMUST00000176347 583 ntTSL 5 BASIC11.83□□□□□ -0.52
Msx1P13297 A630023A22Rik-201ENSMUST00000178958 1277 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Peak1os-201ENSMUST00000181444 1264 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Mir7032-201ENSMUST00000185154 79 ntBASIC11.83□□□□□ -0.52
Msx1P13297 AU022133-201ENSMUST00000200601 873 ntBASIC11.83□□□□□ -0.52
Msx1P13297 Gm38804-201ENSMUST00000203998 767 ntTSL 3 BASIC11.83□□□□□ -0.52
Msx1P13297 Plin1-203ENSMUST00000205413 1294 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Gm33115-201ENSMUST00000220913 743 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Olfr272-201ENSMUST00000051600 962 ntAPPRIS P1 BASIC11.83□□□□□ -0.52
Msx1P13297 Vmn1r213-201ENSMUST00000076897 1155 ntAPPRIS P2 BASIC11.83□□□□□ -0.52
Msx1P13297 Mrpl18-201ENSMUST00000079121 1219 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 2410131K14Rik-201ENSMUST00000049138 5649 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Slc13a5-201ENSMUST00000021161 3329 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Gm16070-203ENSMUST00000155588 1902 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Naga-201ENSMUST00000023088 1913 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Fcgr1-201ENSMUST00000029748 2589 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Rgs17-203ENSMUST00000117676 1651 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Smco1-201ENSMUST00000093183 1408 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Msx1P13297 Ralgds-202ENSMUST00000100241 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Pdlim5-206ENSMUST00000195975 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Khdrbs2-205ENSMUST00000189878 3259 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Klc2-204ENSMUST00000116563 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Dnd1-201ENSMUST00000061522 1451 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Msx1P13297 Pla2g6-201ENSMUST00000047816 2963 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 2610001J05Rik-203ENSMUST00000185219 1606 ntAPPRIS P1 BASIC11.82□□□□□ -0.52
Msx1P13297 AC167669.2-201ENSMUST00000224417 1620 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Larp4-202ENSMUST00000100206 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Rapgef2-202ENSMUST00000118340 6544 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Rph3al-204ENSMUST00000121287 2199 ntAPPRIS P1 TSL 5 BASIC11.82□□□□□ -0.52
Msx1P13297 Leprot-202ENSMUST00000106927 1754 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Pcid2-201ENSMUST00000164416 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Stat3-203ENSMUST00000127638 4516 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Gm6210-201ENSMUST00000204734 1942 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Marco-201ENSMUST00000027639 1925 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Adamts16-201ENSMUST00000080145 4981 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Rgs7bp-201ENSMUST00000063551 7077 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Ifnlr1-201ENSMUST00000074408 4182 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Llgl2-212ENSMUST00000177736 3612 ntAPPRIS ALT2 TSL 2 BASIC11.82□□□□□ -0.52
Msx1P13297 Cnn1-201ENSMUST00000001384 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Gm8206-201ENSMUST00000164139 1956 ntTSL 5 BASIC11.82□□□□□ -0.52
Msx1P13297 6030468B19Rik-201ENSMUST00000106331 1071 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Tmem53-203ENSMUST00000106434 923 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 E130114P18Rik-201ENSMUST00000107067 1092 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Msx1P13297 Gm11233-201ENSMUST00000122357 634 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Gm23673-201ENSMUST00000157474 298 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Gm27046-201ENSMUST00000182160 463 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Gm27023-201ENSMUST00000182372 285 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Gm2546-201ENSMUST00000182630 991 ntBASIC11.82□□□□□ -0.52
Msx1P13297 Gm4691-202ENSMUST00000182989 885 ntTSL 5 BASIC11.82□□□□□ -0.52
Msx1P13297 Pfn1-201ENSMUST00000018437 861 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 34.8 ms