Protein–RNA interactions for Protein: P09027

Hoxd3, Homeobox protein Hox-D3, mousemouse

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hoxd3P09027 Cnmd-203ENSMUST00000165835 1362 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Gm17089-201ENSMUST00000171098 1394 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Gm10544-202ENSMUST00000181887 1923 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Hmgn3-203ENSMUST00000185315 1391 ntAPPRIS ALT2 TSL 2 BASIC9.74□□□□□ -0.85
Hoxd3P09027 Pdcd1-201ENSMUST00000027507 1930 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Dppa4-201ENSMUST00000050705 1378 ntAPPRIS ALT2 TSL 5 BASIC9.74□□□□□ -0.85
Hoxd3P09027 Dbn1-201ENSMUST00000021950 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Add2-202ENSMUST00000203196 1970 ntAPPRIS ALT2 TSL 1 (best) BASIC9.74□□□□□ -0.85
Hoxd3P09027 Gm20633-201ENSMUST00000176742 2831 ntBASIC9.74□□□□□ -0.85
Hoxd3P09027 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm5939-201ENSMUST00000119613 2874 ntBASIC9.73□□□□□ -0.85
Hoxd3P09027 Lims1-202ENSMUST00000020078 4327 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Vrk1-204ENSMUST00000220629 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Pglyrp2-202ENSMUST00000170392 2068 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Odf2-201ENSMUST00000028128 2376 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Necab1-202ENSMUST00000108273 2135 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm43823-201ENSMUST00000197391 1808 ntBASIC9.73□□□□□ -0.85
Hoxd3P09027 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Nccrp1-201ENSMUST00000057974 1531 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Dlc1-201ENSMUST00000033923 6159 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 AC154186.1-201ENSMUST00000227711 1597 ntBASIC9.73□□□□□ -0.85
Hoxd3P09027 Pcbp3-203ENSMUST00000105411 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm7489-201ENSMUST00000100666 1222 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Csn1s2b-203ENSMUST00000113279 745 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Stpg3-202ENSMUST00000114363 1234 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Pbdc1-202ENSMUST00000119477 1239 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm5863-201ENSMUST00000121760 1008 ntBASIC9.73□□□□□ -0.85
Hoxd3P09027 Pdlim2-205ENSMUST00000129174 729 ntTSL 2 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm15738-202ENSMUST00000140892 427 ntTSL 2 BASIC9.73□□□□□ -0.85
Hoxd3P09027 AW495222-202ENSMUST00000149839 868 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm14286-201ENSMUST00000155674 464 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 C130026I21Rik-205ENSMUST00000161267 652 ntAPPRIS ALT2 TSL 3 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Mymx-203ENSMUST00000178858 804 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC9.73□□□□□ -0.85
Hoxd3P09027 2310047D07Rik-201ENSMUST00000189493 735 ntTSL 3 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm42464-201ENSMUST00000196717 417 ntBASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm43830-201ENSMUST00000198760 1067 ntBASIC9.73□□□□□ -0.85
Hoxd3P09027 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 AC154424.1-201ENSMUST00000225883 799 ntBASIC9.73□□□□□ -0.85
Hoxd3P09027 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Rpl29-201ENSMUST00000059802 710 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Isoc2b-201ENSMUST00000064547 1080 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Csn1s2b-201ENSMUST00000072539 810 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Olfr955-201ENSMUST00000073946 945 ntAPPRIS P1 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Spink11-201ENSMUST00000097587 746 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Nrf1-210ENSMUST00000115211 3295 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Arhgef39-201ENSMUST00000054538 1659 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 B230344G16Rik-201ENSMUST00000180782 2024 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Etfrf1-207ENSMUST00000111726 1374 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Pax7-202ENSMUST00000174681 1725 ntAPPRIS ALT1 TSL 5 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gabrg3-201ENSMUST00000068394 1724 ntTSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Cacna1c-203ENSMUST00000112790 7631 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Dock6-201ENSMUST00000034728 6467 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Eif2ak1-201ENSMUST00000100487 4325 ntAPPRIS P1 TSL 1 (best) BASIC9.73□□□□□ -0.85
Hoxd3P09027 Gatad2a-206ENSMUST00000212478 3622 ntAPPRIS ALT2 TSL 5 BASIC9.73□□□□□ -0.85
Hoxd3P09027 Ssr1-203ENSMUST00000225246 1825 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Cdk5rap3-201ENSMUST00000103152 2250 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 B930092H01Rik-201ENSMUST00000213377 2678 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Mdm4-201ENSMUST00000067398 1914 ntAPPRIS ALT1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Nmbr-201ENSMUST00000020015 1599 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC9.72□□□□□ -0.85
Hoxd3P09027 Lmbr1-202ENSMUST00000179191 4836 ntTSL 5 BASIC9.72□□□□□ -0.85
Hoxd3P09027 Nkd2-201ENSMUST00000022051 4016 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Spryd7-201ENSMUST00000022497 4002 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hoxd3P09027 Prrxl1-201ENSMUST00000068938 1610 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Itga4-201ENSMUST00000099972 9767 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Wnt9a-201ENSMUST00000000128 3320 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hoxd3P09027 Kcne2-201ENSMUST00000047383 1690 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm23270-201ENSMUST00000104055 131 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Tnnt3-217ENSMUST00000105957 1028 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hoxd3P09027 Mrpl55-203ENSMUST00000108785 792 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm15808-201ENSMUST00000119046 604 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm11510-201ENSMUST00000120278 347 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm8908-201ENSMUST00000121633 1024 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm15547-201ENSMUST00000122152 333 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm15395-201ENSMUST00000153724 702 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm25043-201ENSMUST00000158604 212 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Gng2-205ENSMUST00000161247 419 ntAPPRIS P1 TSL 3 BASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm3760-201ENSMUST00000167475 804 ntBASIC9.72□□□□□ -0.85
Hoxd3P09027 Pitx2-204ENSMUST00000172645 915 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Hoxd3P09027 C1qtnf2-203ENSMUST00000173002 1147 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
Hoxd3P09027 Gm26763-201ENSMUST00000180968 1093 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms