Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Ocln-201ENSMUST00000022140 2839 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Trim56Q80VI1 Zfp618-203ENSMUST00000107415 8826 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Tbx3-203ENSMUST00000121021 4777 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Rorc-204ENSMUST00000200009 1543 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Ptcd3-201ENSMUST00000082094 2581 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Fam83h-201ENSMUST00000060807 4502 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 9130019O22Rik-202ENSMUST00000164345 2735 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Palm-204ENSMUST00000218631 2725 ntTSL 2 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Shc1-203ENSMUST00000107417 3079 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Abo-202ENSMUST00000114045 1811 ntAPPRIS ALT2 TSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Hdac11-201ENSMUST00000041736 2653 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Itk-202ENSMUST00000101306 1185 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Gm17077-201ENSMUST00000133179 279 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Gm24749-201ENSMUST00000157838 343 ntBASIC14.46□□□□□ -0.09
Trim56Q80VI1 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Gm20537-202ENSMUST00000173131 889 ntAPPRIS P5 TSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 H2al1g-201ENSMUST00000179859 509 ntAPPRIS P1 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Ino80dos-202ENSMUST00000186436 652 ntTSL 5 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Gm17812-201ENSMUST00000204935 318 ntBASIC14.46□□□□□ -0.09
Trim56Q80VI1 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Tm2d2-202ENSMUST00000210536 727 ntTSL 3 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 AC159747.1-201ENSMUST00000219903 265 ntBASIC14.46□□□□□ -0.09
Trim56Q80VI1 Rpl17-ps3-201ENSMUST00000221295 556 ntBASIC14.46□□□□□ -0.09
Trim56Q80VI1 Sidt1-201ENSMUST00000047446 4279 ntAPPRIS ALT2 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Fut1-201ENSMUST00000008605 2580 ntAPPRIS P3 TSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC14.46□□□□□ -0.09
Trim56Q80VI1 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim56Q80VI1 Gm36970-201ENSMUST00000193688 1859 ntBASIC14.46□□□□□ -0.1
Trim56Q80VI1 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim56Q80VI1 Pcgf5-211ENSMUST00000225920 6443 ntBASIC14.46□□□□□ -0.1
Trim56Q80VI1 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim56Q80VI1 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.46□□□□□ -0.1
Trim56Q80VI1 5033406O09Rik-201ENSMUST00000221314 1662 ntTSL 1 (best) BASIC14.46□□□□□ -0.1
Trim56Q80VI1 Magi1-206ENSMUST00000203688 4969 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Bcl11b-201ENSMUST00000066060 8111 ntAPPRIS P4 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Cngb1-203ENSMUST00000120044 3243 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Armcx1-202ENSMUST00000051256 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Slc38a11-201ENSMUST00000112420 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Adgrl1-204ENSMUST00000131717 5152 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm14340-201ENSMUST00000148700 1913 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Anxa11-201ENSMUST00000022416 2394 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Rpl15-203ENSMUST00000100799 802 ntAPPRIS P1 TSL 2 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm23912-201ENSMUST00000104687 87 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 Pole-203ENSMUST00000112482 747 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm14017-201ENSMUST00000121934 386 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 Sirt2-209ENSMUST00000170068 1585 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm11523-203ENSMUST00000184482 802 ntTSL 3 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gstp-ps-201ENSMUST00000195526 631 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm42748-201ENSMUST00000199354 2341 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 9230114K14Rik-203ENSMUST00000199547 437 ntTSL 3 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gtf2ird1-224ENSMUST00000202280 3052 ntAPPRIS ALT2 TSL 5 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm45433-201ENSMUST00000209386 247 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm45799-208ENSMUST00000211054 490 ntAPPRIS P2 TSL 3 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Bet1l-207ENSMUST00000211527 298 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Aprt-ps-201ENSMUST00000212311 505 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 AC153954.1-201ENSMUST00000216959 255 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm21027-201ENSMUST00000219300 1236 ntBASIC14.45□□□□□ -0.1
Trim56Q80VI1 4930578I06Rik-201ENSMUST00000022532 1033 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 4930564D02Rik-201ENSMUST00000070584 737 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Slc39a3-205ENSMUST00000168076 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Armcx2-203ENSMUST00000119010 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm11766-201ENSMUST00000143428 3018 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 5730409E04Rik-202ENSMUST00000164362 2855 ntAPPRIS P1 TSL 3 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Prkca-202ENSMUST00000100302 2265 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 1700003D09Rik-201ENSMUST00000141929 1389 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Eps15l1-203ENSMUST00000212121 2686 ntTSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Vsx1-201ENSMUST00000046095 3791 ntAPPRIS P1 TSL 1 (best) BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Capn3-204ENSMUST00000110716 2752 ntTSL 5 BASIC14.45□□□□□ -0.1
Trim56Q80VI1 Rubcn-203ENSMUST00000115105 5255 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Il13ra1-201ENSMUST00000033418 3712 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Gm2115-201ENSMUST00000180387 7055 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Ywhaz-203ENSMUST00000110361 2285 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Spint5-201ENSMUST00000103097 443 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Ift20-202ENSMUST00000108275 582 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Inca1-203ENSMUST00000108542 1080 ntAPPRIS P3 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Gm6890-201ENSMUST00000114117 776 ntAPPRIS P1 TSL 5 BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Gm5616-201ENSMUST00000165252 384 ntBASIC14.44□□□□□ -0.1
Trim56Q80VI1 Gm8741-201ENSMUST00000174736 384 ntBASIC14.44□□□□□ -0.1
Trim56Q80VI1 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Spint5-202ENSMUST00000180193 443 ntAPPRIS ALT2 TSL 5 BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Gm27341-201ENSMUST00000183570 106 ntBASIC14.44□□□□□ -0.1
Trim56Q80VI1 4930504D19Rik-201ENSMUST00000204799 349 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Acsm5-207ENSMUST00000207813 1084 ntTSL 1 (best) BASIC14.44□□□□□ -0.1
Trim56Q80VI1 Cga-201ENSMUST00000029975 687 ntAPPRIS P1 TSL 1 (best) BASIC14.44□□□□□ -0.1
Retrieved 100 of 76,532 protein–RNA pairs in 55.1 ms