Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 2410002F23Rik-214ENSMUST00000186606 748 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Gm28198-201ENSMUST00000190938 471 ntTSL 3 BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Gm6007-201ENSMUST00000208170 823 ntBASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 AC155813.1-201ENSMUST00000213224 590 ntTSL 3 BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 AC108416.1-202ENSMUST00000228927 1201 ntBASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 U2af1l4-201ENSMUST00000043273 884 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Ctnnb1-214ENSMUST00000178812 2702 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Celf2-205ENSMUST00000114927 1721 ntAPPRIS ALT1 TSL 5 BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Tollip-201ENSMUST00000001950 3788 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Abi1-211ENSMUST00000149719 3303 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Snx33-201ENSMUST00000050916 4571 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Cdk13-207ENSMUST00000223490 12548 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Prmt2-203ENSMUST00000099572 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Tfr2-204ENSMUST00000196471 2839 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Mtus1-202ENSMUST00000059115 6548 ntTSL 5 BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Nr1h3-203ENSMUST00000111355 1672 ntTSL 5 BASIC12.1□□□□□ -0.47
Scaf4Q6PFF0 Calm1-202ENSMUST00000110082 4115 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Samd11-201ENSMUST00000179919 2610 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Rbm8a-202ENSMUST00000196456 2604 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 3200001D21Rik-201ENSMUST00000221603 2283 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Cul5-201ENSMUST00000034529 3585 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Hsd3b3-201ENSMUST00000090743 1492 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Tspoap1-201ENSMUST00000039627 7616 ntAPPRIS P2 TSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Pars2-202ENSMUST00000106781 3046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Gm28036-202ENSMUST00000132494 5505 ntAPPRIS P5 TSL 2 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Gm37660-201ENSMUST00000192754 1732 ntBASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Asap3-201ENSMUST00000047526 4225 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Gm45342-201ENSMUST00000210903 1363 ntBASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Grap2-201ENSMUST00000043149 3158 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Atxn2l-203ENSMUST00000167759 4023 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Sertm1-201ENSMUST00000070342 3083 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Fcho1-201ENSMUST00000093444 3073 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Fn1-213ENSMUST00000188674 7680 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Fn1-217ENSMUST00000190780 7694 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Cyp2s1-201ENSMUST00000043314 2745 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Lims1-203ENSMUST00000105468 1205 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Tspan17-208ENSMUST00000163915 459 ntTSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Borcs5-202ENSMUST00000166591 792 ntTSL 2 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Hddc3-208ENSMUST00000206122 696 ntTSL 3 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Gm45641-201ENSMUST00000209775 452 ntTSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Nanos3-202ENSMUST00000210202 692 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Prg2-201ENSMUST00000028467 838 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Cenpm-202ENSMUST00000089157 1201 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Kdm2a-201ENSMUST00000047898 8578 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Sema6d-207ENSMUST00000103240 4372 ntAPPRIS ALT1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Cc2d1a-202ENSMUST00000117424 3262 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 AC108858.2-201ENSMUST00000228186 1425 ntBASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Rpap2-205ENSMUST00000112655 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Ints1-210ENSMUST00000200393 7070 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Myo5b-203ENSMUST00000121875 6065 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Stxbp5l-201ENSMUST00000023526 3344 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 H3f3a-205ENSMUST00000161308 2841 ntAPPRIS P2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Nudt5-205ENSMUST00000179748 1590 ntAPPRIS P1 TSL 5 BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 Stk32b-201ENSMUST00000094836 3458 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 A430028G04Rik-201ENSMUST00000219095 1973 ntBASIC12.09□□□□□ -0.47
Scaf4Q6PFF0 4930488B22Rik-201ENSMUST00000172500 1722 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Grm5-201ENSMUST00000107263 3516 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Gnas-209ENSMUST00000109088 3519 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Gnas-201ENSMUST00000080493 3519 ntTSL 1 (best) BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Ttbk1-203ENSMUST00000225808 8926 ntAPPRIS ALT2 BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Pla2g6-206ENSMUST00000173163 3018 ntTSL 5 BASIC12.08□□□□□ -0.47
Scaf4Q6PFF0 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Dnmbp-201ENSMUST00000026209 4882 ntAPPRIS P2 TSL 2 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Gm19792-201ENSMUST00000222522 2021 ntTSL 5 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Pde7b-206ENSMUST00000170265 1380 ntAPPRIS ALT2 TSL 5 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Dusp26-203ENSMUST00000161713 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 3110062M04Rik-201ENSMUST00000055097 3681 ntAPPRIS P3 TSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Mir692-1-201ENSMUST00000102263 109 ntBASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Zbtb32-201ENSMUST00000108150 854 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 9230102O04Rik-201ENSMUST00000114915 528 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Nr2f1-203ENSMUST00000127137 991 ntTSL 5 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Gm8018-201ENSMUST00000173536 789 ntBASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Gm24196-201ENSMUST00000179161 110 ntBASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 1700015O11Rik-201ENSMUST00000180964 678 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Gm29233-201ENSMUST00000190311 281 ntTSL 5 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Gm18018-201ENSMUST00000198273 408 ntBASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Phgdh-ps1-201ENSMUST00000207540 754 ntBASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 AC159619.3-201ENSMUST00000222694 473 ntTSL 5 BASIC12.08□□□□□ -0.48
Scaf4Q6PFF0 Pafah2-201ENSMUST00000105869 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
Retrieved 100 of 76,532 protein–RNA pairs in 104.3 ms