Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Chrdl1-202ENSMUST00000074660 4096 ntAPPRIS P3 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gm13369-201ENSMUST00000119442 987 ntBASIC11.72□□□□□ -0.53
Nr1h4Q60641 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 1700030C14Rik-201ENSMUST00000139912 756 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gm11754-201ENSMUST00000156576 661 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Rnf141-207ENSMUST00000176716 1080 ntTSL 2 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 1700072B07Rik-201ENSMUST00000191141 445 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gm19163-201ENSMUST00000223313 780 ntBASIC11.72□□□□□ -0.53
Nr1h4Q60641 AC159006.1-201ENSMUST00000226396 258 ntBASIC11.72□□□□□ -0.53
Nr1h4Q60641 Kcnk9-201ENSMUST00000044624 1209 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gm10146-201ENSMUST00000072739 309 ntBASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gm2423-201ENSMUST00000074863 733 ntBASIC11.72□□□□□ -0.53
Nr1h4Q60641 Nap1l2-201ENSMUST00000121720 2465 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Kcnj5-203ENSMUST00000216033 2440 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Nek1-208ENSMUST00000211256 4810 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Sema3g-201ENSMUST00000090180 4540 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Lrfn5-201ENSMUST00000055815 4410 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Eya1-209ENSMUST00000190337 2199 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Hnrnpf-201ENSMUST00000035493 2147 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Tor1aip1-202ENSMUST00000097527 4234 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 1700082M22Rik-201ENSMUST00000067136 2022 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Pcgf3-201ENSMUST00000046975 7708 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gja5-203ENSMUST00000199597 3668 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Kif1a-203ENSMUST00000171556 5391 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Sowahc-201ENSMUST00000182161 4482 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Tspan2-201ENSMUST00000029451 4484 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Alx1-203ENSMUST00000167156 2689 ntAPPRIS P1 TSL 5 BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Gm16958-201ENSMUST00000180603 1765 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 2010315B03Rik-202ENSMUST00000177714 2623 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Nr1h4Q60641 Zfp710-202ENSMUST00000164056 5871 ntAPPRIS P4 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 AC130671.2-201ENSMUST00000227224 1621 ntBASIC11.71□□□□□ -0.53
Nr1h4Q60641 6030458C11Rik-201ENSMUST00000057256 3966 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Fmo2-202ENSMUST00000111510 2260 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Trim45-204ENSMUST00000134993 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Cnot7-211ENSMUST00000149992 2982 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Phyh-201ENSMUST00000027975 1438 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Zfp597-201ENSMUST00000090522 5668 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Ascc2-202ENSMUST00000109930 4844 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Kcna1-201ENSMUST00000055168 4031 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Slc6a2-202ENSMUST00000165470 6007 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Kansl3-201ENSMUST00000010597 4663 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Ninj1-202ENSMUST00000120733 1321 ntTSL 5 BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Sh3tc1-201ENSMUST00000070203 4549 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Lcn5-203ENSMUST00000100313 660 ntAPPRIS ALT2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Prss45-201ENSMUST00000011391 1232 ntAPPRIS P2 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Grin1-205ENSMUST00000114312 3838 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Grin1-207ENSMUST00000114317 3809 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Hypk-204ENSMUST00000126764 961 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Rwdd3-209ENSMUST00000170781 1111 ntTSL 5 BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Gm35082-202ENSMUST00000208164 525 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 AC110817.1-201ENSMUST00000225706 605 ntBASIC11.71□□□□□ -0.53
Nr1h4Q60641 Asphd1-201ENSMUST00000052937 730 ntAPPRIS P3 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Sertad1-201ENSMUST00000008528 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Kif1a-201ENSMUST00000086819 5097 ntTSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Sspn-201ENSMUST00000032383 4431 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Pik3cd-203ENSMUST00000105689 3132 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.53
Nr1h4Q60641 Eif4enif1-204ENSMUST00000120721 2952 ntTSL 5 BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Cabp5-201ENSMUST00000005791 1777 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Kcnab2-201ENSMUST00000030768 3533 ntAPPRIS ALT1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Adipor2-202ENSMUST00000169744 3489 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Hoxa1-201ENSMUST00000000964 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Gm35507-201ENSMUST00000197932 2761 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Stim1-202ENSMUST00000209255 4362 ntTSL 5 BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Rbm4-206ENSMUST00000180248 2610 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Gm2238-201ENSMUST00000192074 3669 ntBASIC11.71□□□□□ -0.54
Nr1h4Q60641 Zfand2a-202ENSMUST00000110851 3121 ntAPPRIS P1 TSL 1 (best) BASIC11.71□□□□□ -0.54
Nr1h4Q60641 Gm9361-201ENSMUST00000198695 1507 ntBASIC11.7□□□□□ -0.54
Nr1h4Q60641 Gif-201ENSMUST00000025585 1537 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nr1h4Q60641 Osgin1-206ENSMUST00000152420 2005 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nr1h4Q60641 Vamp1-203ENSMUST00000100942 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nr1h4Q60641 AC160410.1-201ENSMUST00000219298 1972 ntBASIC11.7□□□□□ -0.54
Nr1h4Q60641 Gm43075-201ENSMUST00000198613 3905 ntBASIC11.7□□□□□ -0.54
Nr1h4Q60641 Gm43174-201ENSMUST00000195914 2445 ntBASIC11.7□□□□□ -0.54
Nr1h4Q60641 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Nr1h4Q60641 Col6a6-203ENSMUST00000166431 7098 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
Nr1h4Q60641 Ptger4-201ENSMUST00000047379 3264 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nr1h4Q60641 Rfx1-201ENSMUST00000005600 4172 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
Nr1h4Q60641 Fosb-205ENSMUST00000208326 3654 ntTSL 5 BASIC11.7□□□□□ -0.54
Retrieved 100 of 76,532 protein–RNA pairs in 41 ms