Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rps3-202ENSMUST00000107096 952 ntTSL 3 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Cdc26-202ENSMUST00000107459 654 ntAPPRIS P1 TSL 2 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm11930-201ENSMUST00000117788 190 ntBASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Pyy-202ENSMUST00000127381 529 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 6530403H02Rik-204ENSMUST00000183276 659 ntTSL 3 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm3096-201ENSMUST00000185770 364 ntBASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm28379-201ENSMUST00000186450 554 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm28192-201ENSMUST00000189381 778 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm7118-201ENSMUST00000200167 1003 ntBASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm2420-203ENSMUST00000202748 447 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Tpd52l1-203ENSMUST00000213639 827 ntAPPRIS ALT2 TSL 2 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 AC154222.2-201ENSMUST00000225848 607 ntBASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Dhrs4-202ENSMUST00000226168 828 ntBASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Tm2d3-201ENSMUST00000032726 908 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Ctrb1-201ENSMUST00000034435 878 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Mirlet7c-2-201ENSMUST00000083674 95 ntBASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm16519-201ENSMUST00000092011 489 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Entpd4-206ENSMUST00000184973 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Entpd4b-204ENSMUST00000185072 3589 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Rnls-202ENSMUST00000163093 1378 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Plxnb2-201ENSMUST00000060808 6394 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Cpped1-201ENSMUST00000073371 1922 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Ilvbl-212ENSMUST00000220430 2350 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Dnpep-202ENSMUST00000113605 1571 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Myo15b-208ENSMUST00000222123 5154 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Sowahb-201ENSMUST00000061328 3900 ntAPPRIS P1 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Capn11-201ENSMUST00000120717 2591 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Dph2-201ENSMUST00000030265 2555 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Zfp61-208ENSMUST00000165241 1668 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.31
Upf3bQ3ULL6 Gm26677-201ENSMUST00000180553 1672 ntTSL 5 BASIC13.15□□□□□ -0.31
Upf3bQ3ULL6 Cpped1-202ENSMUST00000096272 2663 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.31
Upf3bQ3ULL6 Gm43061-201ENSMUST00000198850 2241 ntBASIC13.15□□□□□ -0.31
Upf3bQ3ULL6 Gm9951-202ENSMUST00000149618 1772 ntTSL 2 BASIC13.15□□□□□ -0.31
Upf3bQ3ULL6 Nckap5l-201ENSMUST00000023747 4853 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Rmi1-201ENSMUST00000042450 3855 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Stau1-203ENSMUST00000109236 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Prr15l-201ENSMUST00000054311 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Zfp94-201ENSMUST00000032673 2529 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Wfdc8-201ENSMUST00000094351 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Tcf4-205ENSMUST00000114980 2192 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Anks1b-221ENSMUST00000182786 3042 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Zscan10-202ENSMUST00000115509 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Dysf-205ENSMUST00000113823 6578 ntAPPRIS ALT2 TSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Pmp22-204ENSMUST00000108702 1822 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Olfr707-203ENSMUST00000210644 1817 ntAPPRIS P1 TSL 3 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Rpl3-ps1-201ENSMUST00000120557 1210 ntBASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gm11755-201ENSMUST00000144096 891 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gm13832-202ENSMUST00000151159 370 ntTSL 3 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gm17344-201ENSMUST00000171173 1159 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gm43755-201ENSMUST00000200001 408 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Fmr1nb-202ENSMUST00000071848 842 ntAPPRIS P3 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Gm10312-201ENSMUST00000078515 489 ntBASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Slc3a2-207ENSMUST00000206598 1393 ntTSL 2 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Nsd3-208ENSMUST00000146919 3652 ntTSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 BC024139-201ENSMUST00000054022 2623 ntAPPRIS P2 TSL 1 (best) BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Opcml-201ENSMUST00000073822 2378 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Galntl6-208ENSMUST00000204128 5680 ntAPPRIS P1 TSL 5 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Madd-203ENSMUST00000075269 5756 ntAPPRIS ALT2 TSL 2 BASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Zfp125-201ENSMUST00000079237 2488 ntBASIC13.14□□□□□ -0.31
Upf3bQ3ULL6 Plekhg4-201ENSMUST00000014927 4167 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Foxd4-201ENSMUST00000058600 2345 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Hspa2-202ENSMUST00000219555 2526 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gata3-201ENSMUST00000102976 3215 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Etf1-201ENSMUST00000025218 3709 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Zfp536-203ENSMUST00000176114 4341 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Arhgef10l-202ENSMUST00000069623 4531 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gabpb1-206ENSMUST00000110425 4153 ntAPPRIS ALT1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Runx3-201ENSMUST00000056977 3884 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Rbak-202ENSMUST00000165318 3480 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Smc4-201ENSMUST00000042901 4316 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 2610507I01Rik-201ENSMUST00000154354 1360 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm24830-201ENSMUST00000102024 166 ntBASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Ifna7-201ENSMUST00000105143 573 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm6370-201ENSMUST00000110611 1142 ntAPPRIS P2 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 A430060F13Rik-201ENSMUST00000124176 378 ntBASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm16087-201ENSMUST00000124395 964 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm6309-201ENSMUST00000174320 1154 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm13381-202ENSMUST00000177012 640 ntTSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Erdr1-201ENSMUST00000177591 774 ntAPPRIS P5 TSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Camsap3-203ENSMUST00000207077 3832 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm38979-201ENSMUST00000207099 698 ntTSL 3 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Gm39929-201ENSMUST00000209672 693 ntTSL 3 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 Ldha-213ENSMUST00000210631 685 ntTSL 5 BASIC13.13□□□□□ -0.31
Upf3bQ3ULL6 AC166344.1-202ENSMUST00000224139 234 ntBASIC13.13□□□□□ -0.31
Retrieved 100 of 76,532 protein–RNA pairs in 53.3 ms