Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Gm44929-202ENSMUST00000209134 1653 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Rnh1-204ENSMUST00000210314 1658 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Cuedc1-201ENSMUST00000018522 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Pip5kl1-201ENSMUST00000055304 1577 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Wdr91-201ENSMUST00000081214 2682 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Dync1li1-201ENSMUST00000047404 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Tcim-201ENSMUST00000052622 1805 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
Rnf180Q3U827 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Psmf1-202ENSMUST00000109869 1384 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Padi4-201ENSMUST00000026381 2316 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Syncrip-210ENSMUST00000174391 6257 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm13305-201ENSMUST00000098121 1953 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Oxr1-204ENSMUST00000110297 4596 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Sh2b3-202ENSMUST00000086310 4195 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm10842-201ENSMUST00000100338 369 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Xlr4c-204ENSMUST00000114531 1104 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm11540-201ENSMUST00000117457 780 ntBASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm15982-201ENSMUST00000121681 554 ntBASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm11587-201ENSMUST00000128274 1120 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Eif5a-212ENSMUST00000153652 840 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm25492-201ENSMUST00000157383 129 ntBASIC14.24□□□□□ -0.13
Rnf180Q3U827 4933417D19Rik-201ENSMUST00000181432 1229 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm19015-201ENSMUST00000184002 1189 ntBASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm28415-201ENSMUST00000187528 452 ntTSL 2 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Cdk5-203ENSMUST00000198990 783 ntTSL 5 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Pet100-203ENSMUST00000207389 363 ntTSL 2 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gm45113-201ENSMUST00000207518 165 ntBASIC14.24□□□□□ -0.13
Rnf180Q3U827 Gstz1-203ENSMUST00000220574 971 ntTSL 2 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 AC154305.4-201ENSMUST00000224520 614 ntBASIC14.24□□□□□ -0.13
Rnf180Q3U827 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Pard3-222ENSMUST00000162536 5175 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Sstr2-203ENSMUST00000146390 2143 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Ino80-202ENSMUST00000110808 3928 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Dcaf6-201ENSMUST00000027856 4110 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Irf9-205ENSMUST00000138037 2343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Rnf180Q3U827 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 D430013B06Rik-201ENSMUST00000192922 1872 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Cttn-201ENSMUST00000033407 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 2610507B11Rik-201ENSMUST00000010421 7443 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Kcne3-202ENSMUST00000170954 1315 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Snx27-208ENSMUST00000200642 1308 ntTSL 5 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Rfx5-203ENSMUST00000107254 4450 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Col1a1-201ENSMUST00000001547 5930 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Phka1-201ENSMUST00000043596 5938 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Skint7-202ENSMUST00000106568 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Fam107b-202ENSMUST00000115052 861 ntTSL 3 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Gm13422-201ENSMUST00000118834 504 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Snhg3-202ENSMUST00000141090 581 ntTSL 2 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Cideb-201ENSMUST00000001497 1212 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Tex29-204ENSMUST00000166638 561 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Gm9372-201ENSMUST00000168454 430 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Gm7741-201ENSMUST00000181445 989 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Map7-203ENSMUST00000213312 795 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 CT030170.2-201ENSMUST00000223267 126 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Nutf2-ps1-201ENSMUST00000095978 864 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Lrp2bp-201ENSMUST00000066451 1525 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Endov-202ENSMUST00000106244 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Fam227a-204ENSMUST00000187519 2283 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Tsku-204ENSMUST00000165901 2514 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Ptpn2-202ENSMUST00000120934 1497 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Gapdhs-203ENSMUST00000182634 1457 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Smok4a-201ENSMUST00000074512 1455 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Gm44401-201ENSMUST00000204462 2375 ntBASIC14.23□□□□□ -0.13
Rnf180Q3U827 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Rnf180Q3U827 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Clec16a-211ENSMUST00000155633 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Pigq-209ENSMUST00000140304 1835 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Apc-202ENSMUST00000079362 8867 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Gpr143-201ENSMUST00000026383 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Tcirg1-201ENSMUST00000001801 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Hsd17b11-202ENSMUST00000119025 2234 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Abhd12b-203ENSMUST00000169156 1775 ntAPPRIS P2 TSL 5 BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Cggbp1-201ENSMUST00000067744 4425 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Gpd1-201ENSMUST00000023760 2861 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Kcnma1-213ENSMUST00000188991 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Gm12009-201ENSMUST00000121361 1100 ntBASIC14.22□□□□□ -0.13
Rnf180Q3U827 Gm17221-201ENSMUST00000163909 481 ntBASIC14.22□□□□□ -0.13
Rnf180Q3U827 Gm17073-201ENSMUST00000168069 556 ntBASIC14.22□□□□□ -0.13
Rnf180Q3U827 Gm20703-201ENSMUST00000175668 385 ntTSL 2 BASIC14.22□□□□□ -0.13
Rnf180Q3U827 Mir6359-201ENSMUST00000183668 81 ntBASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 70.6 ms