Protein–RNA interactions for Protein: P11260

Lire1, LINE-1 retrotransposable element ORF1 protein, mousemouse

Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lire1P11260 Gm26747-201ENSMUST00000180597 1716 ntTSL 5 BASIC11.74□□□□□ -0.53
Lire1P11260 Pdlim5-208ENSMUST00000196220 1725 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Poc1b-203ENSMUST00000159228 1799 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Lrrc30-201ENSMUST00000097290 1759 ntAPPRIS P1 BASIC11.74□□□□□ -0.53
Lire1P11260 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Gm20605-201ENSMUST00000177545 4464 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Lire1P11260 Leng8-203ENSMUST00000121270 3620 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Lire1P11260 Trpm1-217ENSMUST00000206263 5493 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Lire1P11260 Pld5-203ENSMUST00000111167 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Robo3-201ENSMUST00000034643 4712 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
Lire1P11260 Setd5-201ENSMUST00000042889 6755 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Ptp4a1-201ENSMUST00000027232 4145 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Zfand2a-201ENSMUST00000079996 3169 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Gtf2i-201ENSMUST00000059042 4455 ntAPPRIS P4 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Dusp6-204ENSMUST00000220291 2359 ntTSL 5 BASIC11.74□□□□□ -0.53
Lire1P11260 Styxl1-202ENSMUST00000111161 963 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Gm13886-201ENSMUST00000117876 1183 ntBASIC11.74□□□□□ -0.53
Lire1P11260 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.74□□□□□ -0.53
Lire1P11260 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC11.74□□□□□ -0.53
Lire1P11260 Dnase2a-206ENSMUST00000145292 678 ntTSL 5 BASIC11.74□□□□□ -0.53
Lire1P11260 Gm12349-201ENSMUST00000153030 657 ntTSL 3 BASIC11.74□□□□□ -0.53
Lire1P11260 Gm37922-201ENSMUST00000195596 455 ntBASIC11.74□□□□□ -0.53
Lire1P11260 Gm44066-201ENSMUST00000203263 519 ntTSL 3 BASIC11.74□□□□□ -0.53
Lire1P11260 Gm7783-201ENSMUST00000204795 781 ntBASIC11.74□□□□□ -0.53
Lire1P11260 Rn7sk-201ENSMUST00000083103 331 ntBASIC11.74□□□□□ -0.53
Lire1P11260 Gm26315-201ENSMUST00000083890 321 ntBASIC11.74□□□□□ -0.53
Lire1P11260 Gm10268-201ENSMUST00000085340 555 ntBASIC11.74□□□□□ -0.53
Lire1P11260 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Maml3-201ENSMUST00000118075 5450 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Slc35a4-206ENSMUST00000186538 2842 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Gpr18-201ENSMUST00000055475 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Arhgap24-202ENSMUST00000073302 3151 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Prdx2-203ENSMUST00000109734 1612 ntAPPRIS P1 TSL 2 BASIC11.74□□□□□ -0.53
Lire1P11260 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Krt32-201ENSMUST00000107419 1664 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Fbxl12-207ENSMUST00000151861 1668 ntTSL 2 BASIC11.74□□□□□ -0.53
Lire1P11260 Gas8-201ENSMUST00000093043 1681 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Ppox-201ENSMUST00000073120 1821 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Gstt3-201ENSMUST00000001715 1880 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Cacna1c-212ENSMUST00000187940 7507 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Pafah1b2-201ENSMUST00000172450 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Gm16348-202ENSMUST00000146654 2385 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Ankmy2-201ENSMUST00000041640 2456 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Lrp8-206ENSMUST00000126573 2590 ntTSL 5 BASIC11.74□□□□□ -0.53
Lire1P11260 L3mbtl2-208ENSMUST00000174229 2578 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
Lire1P11260 Rpe-201ENSMUST00000027157 2692 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Slc25a42-201ENSMUST00000063788 3081 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Lire1P11260 Acvrl1-205ENSMUST00000120754 3506 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
Lire1P11260 Hkdc1-201ENSMUST00000020277 3517 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Igsf3-201ENSMUST00000043983 7371 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Gfra1-201ENSMUST00000026076 4641 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Arhgef28-201ENSMUST00000109426 5387 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Mos-201ENSMUST00000105158 1449 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Lire1P11260 Vsir-203ENSMUST00000105460 4843 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Tagln2-201ENSMUST00000111228 716 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
Lire1P11260 Arr3-201ENSMUST00000113769 1359 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 S100pbp-205ENSMUST00000117350 2241 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Gm13342-201ENSMUST00000121055 207 ntBASIC11.73□□□□□ -0.53
Lire1P11260 Prss41-202ENSMUST00000122936 1088 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 C030005K06Rik-201ENSMUST00000129164 2076 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Gm11638-201ENSMUST00000153672 1615 ntTSL 2 BASIC11.73□□□□□ -0.53
Lire1P11260 2810404F17Rik-201ENSMUST00000156615 1704 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Gm16379-201ENSMUST00000161469 348 ntBASIC11.73□□□□□ -0.53
Lire1P11260 Prg4-207ENSMUST00000162367 1480 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Gm8762-201ENSMUST00000193486 339 ntBASIC11.73□□□□□ -0.53
Lire1P11260 Vsir-201ENSMUST00000020301 4846 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Ormdl2-204ENSMUST00000219524 724 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
Lire1P11260 CT010486.3-201ENSMUST00000224555 811 ntBASIC11.73□□□□□ -0.53
Lire1P11260 Gabrr1-201ENSMUST00000029947 2286 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Mpi-201ENSMUST00000034856 1780 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Cplx1-201ENSMUST00000046892 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Gm5129-201ENSMUST00000065372 300 ntAPPRIS P1 BASIC11.73□□□□□ -0.53
Lire1P11260 Gm648-201ENSMUST00000081133 1040 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Cacna1c-227ENSMUST00000220022 7765 ntTSL 5 BASIC11.73□□□□□ -0.53
Lire1P11260 Pcsk7-201ENSMUST00000039059 3876 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Telo2-202ENSMUST00000115181 3530 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Rcan2-202ENSMUST00000044895 3363 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Plin4-202ENSMUST00000190703 5756 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 Gm43727-201ENSMUST00000198021 2647 ntBASIC11.73□□□□□ -0.53
Lire1P11260 Crybg3-201ENSMUST00000044604 5231 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
Lire1P11260 0610009O20Rik-201ENSMUST00000025314 2404 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Maob-201ENSMUST00000040820 2411 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Trip4-201ENSMUST00000117083 1999 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Uspl1-205ENSMUST00000121416 3792 ntAPPRIS ALT2 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 4732471J01Rik-203ENSMUST00000206300 1887 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Gm15684-201ENSMUST00000160605 1814 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Usp18-201ENSMUST00000032198 1771 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Neil1-203ENSMUST00000190245 1693 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 P2rx7-203ENSMUST00000100737 4936 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Lire1P11260 Bdh1-203ENSMUST00000115227 3122 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms