Protein–RNA interactions for Protein: P06804

Tnf, Tumor necrosis factor, mousemouse

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TnfP06804 Elovl6-202ENSMUST00000197070 2275 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Acp5-203ENSMUST00000165735 1376 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Ccnk-201ENSMUST00000101055 2627 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
TnfP06804 Abcc5-202ENSMUST00000079158 5811 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Tmc8-204ENSMUST00000119455 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Gm16090-201ENSMUST00000130296 1704 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Pygm-201ENSMUST00000035269 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Esrrb-203ENSMUST00000110204 4196 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
TnfP06804 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
TnfP06804 Rab11fip1-201ENSMUST00000033878 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Dolpp1-202ENSMUST00000113612 1958 ntTSL 3 BASIC13.01□□□□□ -0.33
TnfP06804 Atxn7l3b-201ENSMUST00000099276 3566 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
TnfP06804 Tmc4-202ENSMUST00000121743 2204 ntAPPRIS ALT2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Slc9b1-201ENSMUST00000078568 2248 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Arhgef2-201ENSMUST00000029694 4300 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Polg-201ENSMUST00000073889 7837 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Irs4-201ENSMUST00000067841 6294 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Kcnj11-205ENSMUST00000211674 3142 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
TnfP06804 Tmem255b-202ENSMUST00000167505 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Retn-202ENSMUST00000169234 1139 ntAPPRIS P1 TSL 2 BASIC13.01□□□□□ -0.33
TnfP06804 Gm17334-201ENSMUST00000170390 907 ntAPPRIS P1 BASIC13.01□□□□□ -0.33
TnfP06804 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC13.01□□□□□ -0.33
TnfP06804 Ighv4-2-201ENSMUST00000192975 362 ntBASIC13.01□□□□□ -0.33
TnfP06804 Gm18038-201ENSMUST00000197900 485 ntBASIC13.01□□□□□ -0.33
TnfP06804 Gm44136-201ENSMUST00000203819 1106 ntBASIC13.01□□□□□ -0.33
TnfP06804 Gm44711-201ENSMUST00000205414 1264 ntBASIC13.01□□□□□ -0.33
TnfP06804 Gm4607-201ENSMUST00000206649 577 ntBASIC13.01□□□□□ -0.33
TnfP06804 Nsd1-205ENSMUST00000224693 852 ntBASIC13.01□□□□□ -0.33
TnfP06804 Gm11555-201ENSMUST00000073126 492 ntTSL 5 BASIC13.01□□□□□ -0.33
TnfP06804 Tnni3-201ENSMUST00000098859 912 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Serpina11-201ENSMUST00000074693 1447 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Exosc1-202ENSMUST00000112123 1499 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Pcp4l1-201ENSMUST00000111332 1577 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 AC154671.1-201ENSMUST00000228617 1578 ntBASIC13.01□□□□□ -0.33
TnfP06804 Gba-202ENSMUST00000167998 1938 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Rcor2-202ENSMUST00000113369 2013 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Irf1-202ENSMUST00000108920 2137 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Foxp1-205ENSMUST00000113324 2121 ntTSL 5 BASIC13.01□□□□□ -0.33
TnfP06804 Foxp1-207ENSMUST00000113328 2121 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Foxp1-228ENSMUST00000177307 2121 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Mrps17-206ENSMUST00000121339 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Tjap1-201ENSMUST00000012440 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Proser3-202ENSMUST00000108165 2466 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Proser3-206ENSMUST00000215288 2465 ntAPPRIS ALT2 TSL 5 BASIC13.01□□□□□ -0.33
TnfP06804 M6pr-202ENSMUST00000112610 2539 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
TnfP06804 M6pr-201ENSMUST00000007602 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 5430419D17Rik-201ENSMUST00000050586 2928 ntTSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Ebf1-202ENSMUST00000101326 3422 ntAPPRIS ALT1 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Dennd4b-201ENSMUST00000098914 5423 ntAPPRIS P2 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Dido1-202ENSMUST00000087517 8723 ntAPPRIS P4 TSL 1 (best) BASIC13.01□□□□□ -0.33
TnfP06804 Alx4-202ENSMUST00000111254 7056 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Trabd2b-201ENSMUST00000094894 6617 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
TnfP06804 Twnk-201ENSMUST00000026227 3488 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Pgghg-201ENSMUST00000079403 2981 ntAPPRIS P2 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Gm37513-201ENSMUST00000194830 2268 ntBASIC13□□□□□ -0.33
TnfP06804 Gm38378-201ENSMUST00000195153 2268 ntBASIC13□□□□□ -0.33
TnfP06804 Armcx6-202ENSMUST00000113194 2120 ntAPPRIS P1 TSL 2 BASIC13□□□□□ -0.33
TnfP06804 Gm8038-201ENSMUST00000164674 2044 ntBASIC13□□□□□ -0.33
TnfP06804 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Cdk7-201ENSMUST00000091299 1988 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Ldb3-203ENSMUST00000022330 1586 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Tex45-203ENSMUST00000161680 1526 ntAPPRIS P1 TSL 5 BASIC13□□□□□ -0.33
TnfP06804 Trim27-205ENSMUST00000221464 1400 ntTSL 5 BASIC13□□□□□ -0.33
TnfP06804 6030443J06Rik-202ENSMUST00000181374 1353 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Gm12589-201ENSMUST00000153767 638 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Gm14249-201ENSMUST00000156239 1017 ntTSL 5 BASIC13□□□□□ -0.33
TnfP06804 Gm13115-201ENSMUST00000156438 620 ntTSL 5 BASIC13□□□□□ -0.33
TnfP06804 Lsm2-207ENSMUST00000173004 870 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Prox2os-201ENSMUST00000177043 1133 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Hcfc1r1-203ENSMUST00000180140 693 ntAPPRIS P2 TSL 2 BASIC13□□□□□ -0.33
TnfP06804 1110008E08Rik-202ENSMUST00000183621 723 ntBASIC13□□□□□ -0.33
TnfP06804 Gm33222-201ENSMUST00000193725 654 ntTSL 3 BASIC13□□□□□ -0.33
TnfP06804 Washc3-201ENSMUST00000020248 1052 ntAPPRIS P3 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Ly6g5c-201ENSMUST00000037849 509 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 C1qb-201ENSMUST00000046384 1088 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Sh3bp5l-202ENSMUST00000116376 3016 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Gsn-205ENSMUST00000201185 2607 ntAPPRIS ALT2 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Madd-212ENSMUST00000111375 5706 ntAPPRIS ALT2 TSL 5 BASIC13□□□□□ -0.33
TnfP06804 Hdgfl2-212ENSMUST00000226053 2270 ntAPPRIS P2 BASIC13□□□□□ -0.33
TnfP06804 Slc7a3-201ENSMUST00000073927 2232 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Vps35-201ENSMUST00000034131 3474 ntAPPRIS P1 TSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 Kif1a-202ENSMUST00000112958 5931 ntTSL 1 (best) BASIC13□□□□□ -0.33
TnfP06804 1700110I01Rik-201ENSMUST00000112775 1671 ntTSL 5 BASIC12.99□□□□□ -0.33
TnfP06804 Ndufs4-201ENSMUST00000022286 1698 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Prkca-201ENSMUST00000059595 8409 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Zfp433-202ENSMUST00000200889 2384 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Gm32687-201ENSMUST00000220314 2379 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Ctps2-206ENSMUST00000112303 3289 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Esr2-201ENSMUST00000076634 3288 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Sde2-201ENSMUST00000038091 3213 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Grip1-212ENSMUST00000147356 4145 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Kcnc1-203ENSMUST00000160433 3156 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
TnfP06804 Wnt7a-201ENSMUST00000032180 3172 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 50.6 ms