Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Gjc1-202ENSMUST00000092567 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
Chd3B1AR17 Ccl27a-206ENSMUST00000108037 590 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm12566-201ENSMUST00000121479 359 ntBASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm16046-203ENSMUST00000150889 1001 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Cmtm1-201ENSMUST00000159039 1130 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 7530416G11Rik-201ENSMUST00000178942 1161 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm28913-201ENSMUST00000186240 364 ntTSL 3 BASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm2453-202ENSMUST00000195508 568 ntTSL 3 BASIC12.02□□□□□ -0.48
Chd3B1AR17 AY036118-201ENSMUST00000200021 923 ntBASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm18730-201ENSMUST00000218038 343 ntBASIC12.02□□□□□ -0.48
Chd3B1AR17 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.02□□□□□ -0.48
Chd3B1AR17 Kiss1r-201ENSMUST00000045529 3163 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm12802-201ENSMUST00000145510 1813 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Mief1-201ENSMUST00000023048 5081 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Aire-202ENSMUST00000105395 1630 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm26531-201ENSMUST00000181727 1967 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm17435-202ENSMUST00000212699 1998 ntBASIC12.02□□□□□ -0.48
Chd3B1AR17 Dusp14-201ENSMUST00000018792 1571 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.48
Chd3B1AR17 Timp3-201ENSMUST00000020234 4722 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
Chd3B1AR17 Gm7049-201ENSMUST00000223520 1712 ntBASIC12.02□□□□□ -0.48
Chd3B1AR17 Mfsd4a-204ENSMUST00000126927 2422 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 AC163354.1-205ENSMUST00000223262 1511 ntTSL 5 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Cd207-201ENSMUST00000037882 1522 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Prkcd-204ENSMUST00000112206 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Hid1-202ENSMUST00000106542 3276 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Tgm2-201ENSMUST00000103122 3596 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Mettl27-201ENSMUST00000047196 2808 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Irf8-201ENSMUST00000047737 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Neil1-202ENSMUST00000186410 1601 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 C77080-202ENSMUST00000097873 5033 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Gm26286-201ENSMUST00000104166 134 ntBASIC12.02□□□□□ -0.49
Chd3B1AR17 BC026585-202ENSMUST00000119891 1125 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Gm15906-201ENSMUST00000124746 323 ntTSL 5 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Gm12298-201ENSMUST00000126999 731 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Dnajb6-202ENSMUST00000012734 1024 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Prdx5-203ENSMUST00000149261 755 ntAPPRIS ALT2 TSL 2 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Gm26782-202ENSMUST00000181697 971 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Ighv4-2-201ENSMUST00000192975 362 ntBASIC12.02□□□□□ -0.49
Chd3B1AR17 Mcpt1-201ENSMUST00000022836 1014 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Fam241b-201ENSMUST00000027719 771 ntTSL 3 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Olfr605-201ENSMUST00000080660 1011 ntAPPRIS P1 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Det1-202ENSMUST00000107431 1439 ntTSL 5 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Sh3bp2-201ENSMUST00000067638 2885 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Xpot-201ENSMUST00000039810 5992 ntTSL 5 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Tcn2-201ENSMUST00000020710 1897 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Ivns1abp-202ENSMUST00000097543 3337 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Zbtb7b-202ENSMUST00000107432 3639 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Tfcp2-201ENSMUST00000009877 3250 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Mau2-202ENSMUST00000168013 5323 ntAPPRIS ALT2 TSL 5 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Il20ra-201ENSMUST00000020185 2105 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
Chd3B1AR17 Ino80-201ENSMUST00000049920 6354 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
Chd3B1AR17 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Tfe3-202ENSMUST00000079542 3163 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Dner-201ENSMUST00000049126 3632 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Tsc2-217ENSMUST00000227745 5598 ntAPPRIS ALT2 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Cdc7-201ENSMUST00000031221 2961 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Myo1d-202ENSMUST00000070997 3106 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Gm29253-201ENSMUST00000185727 5231 ntTSL 5 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Gltp-202ENSMUST00000112212 799 ntTSL 5 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Cd63-ps-202ENSMUST00000154992 717 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 Gm15852-201ENSMUST00000159701 915 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Gm3332-201ENSMUST00000189337 928 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 Aprt-ps-201ENSMUST00000212311 505 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 Ggps1-204ENSMUST00000221713 667 ntTSL 3 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Ift43-205ENSMUST00000222821 783 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Lce3d-201ENSMUST00000059053 491 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 S100a1-201ENSMUST00000060738 677 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Ppargc1b-202ENSMUST00000075299 3656 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Olfr959-201ENSMUST00000079178 1055 ntAPPRIS P1 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Ercc8-201ENSMUST00000054835 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Phldb1-201ENSMUST00000034611 5461 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Dram1-201ENSMUST00000020249 2807 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Epb41l1-202ENSMUST00000103135 6177 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Henmt1-205ENSMUST00000196533 1491 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Cfap52-201ENSMUST00000021287 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 2810430I11Rik-201ENSMUST00000154246 3416 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Cenpo-201ENSMUST00000020981 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Zfp541-202ENSMUST00000209369 4879 ntAPPRIS P2 TSL 5 BASIC12.01□□□□□ -0.49
Chd3B1AR17 2310035C23Rik-201ENSMUST00000039173 4328 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Dmac2-202ENSMUST00000085953 2387 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 2610011E03Rik-201ENSMUST00000200128 2235 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 Rsbn1-201ENSMUST00000051139 4762 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Chd3B1AR17 Tm2d3-203ENSMUST00000107495 1003 ntAPPRIS P4 TSL 5 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Mdk-ps1-201ENSMUST00000119782 321 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 Gm18393-201ENSMUST00000208349 1131 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 Lysmd4-208ENSMUST00000208698 551 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Gm29208-205ENSMUST00000214517 1056 ntTSL 5 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Cct2-206ENSMUST00000219573 637 ntTSL 3 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Tnfrsf19-203ENSMUST00000224371 1239 ntAPPRIS ALT2 BASIC12.01□□□□□ -0.49
Chd3B1AR17 Gm10702-201ENSMUST00000098929 1268 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 AC159308.2-201ENSMUST00000213592 2325 ntBASIC12.01□□□□□ -0.49
Chd3B1AR17 Slc24a4-201ENSMUST00000079020 2337 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 86.2 ms