Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Aif1-206ENSMUST00000173324 875 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Lrcol1-202ENSMUST00000185691 764 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Gm42442-201ENSMUST00000197951 1133 ntBASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Gm43597-201ENSMUST00000201650 1057 ntTSL 3 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Gm44799-201ENSMUST00000207639 1202 ntBASIC12.15□□□□□ -0.46
Lima1Q9ERG0 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Cdk7-205ENSMUST00000225990 1159 ntBASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Pop4-201ENSMUST00000032585 2113 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Gm10146-201ENSMUST00000072739 309 ntBASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Gm6091-201ENSMUST00000098307 165 ntBASIC12.15□□□□□ -0.46
Lima1Q9ERG0 S100a16-201ENSMUST00000098910 1123 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Tmem132a-201ENSMUST00000025645 3657 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Parp9-203ENSMUST00000114878 3548 ntAPPRIS P2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Il2rb-201ENSMUST00000089398 2692 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 4930423D22Rik-201ENSMUST00000221909 1674 ntBASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Pxylp1-201ENSMUST00000078478 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Bcas3-202ENSMUST00000092821 2769 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Hmbs-202ENSMUST00000097558 1534 ntTSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Esrp1-201ENSMUST00000043781 3743 ntTSL 5 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Pou5f2-201ENSMUST00000175955 1394 ntAPPRIS P1 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Klhdc7b-202ENSMUST00000225666 3951 ntAPPRIS ALT2 BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Prkag3-201ENSMUST00000081636 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.46
Lima1Q9ERG0 Prune1-201ENSMUST00000015855 3140 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lima1Q9ERG0 Eif5a2-201ENSMUST00000060500 5027 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lima1Q9ERG0 Kifap3-201ENSMUST00000027877 3946 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lima1Q9ERG0 Asph-212ENSMUST00000108340 6646 ntAPPRIS ALT2 TSL 1 (best) BASIC12.15□□□□□ -0.47
Lima1Q9ERG0 Dgkz-203ENSMUST00000111303 4169 ntTSL 1 (best) BASIC12.15□□□□□ -0.47
Lima1Q9ERG0 Gm29609-201ENSMUST00000101411 3223 ntAPPRIS P1 TSL 2 BASIC12.15□□□□□ -0.47
Lima1Q9ERG0 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Zeb2-201ENSMUST00000028229 5335 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Mirg-202ENSMUST00000181543 1300 ntTSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Fn1-201ENSMUST00000055226 8315 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Tmem8b-201ENSMUST00000107864 4726 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Tmem246-201ENSMUST00000042750 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Reps1-201ENSMUST00000126390 2595 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Olfr56-202ENSMUST00000102785 1930 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Epb41l1-206ENSMUST00000109577 6251 ntTSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Matn2-202ENSMUST00000163455 3577 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Ngf-202ENSMUST00000106925 1187 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Phlda2-201ENSMUST00000010904 757 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm11424-201ENSMUST00000121929 829 ntBASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm11261-203ENSMUST00000132470 838 ntTSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm10863-204ENSMUST00000147620 776 ntTSL 3 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Ssr4-208ENSMUST00000166518 800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Ucma-204ENSMUST00000167607 785 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm4271-201ENSMUST00000174444 973 ntBASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm29649-201ENSMUST00000185649 419 ntBASIC12.14□□□□□ -0.47
Lima1Q9ERG0 AC165254.1-201ENSMUST00000220736 599 ntTSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 AC140375.2-201ENSMUST00000225283 584 ntBASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm10371-202ENSMUST00000228010 1081 ntBASIC12.14□□□□□ -0.47
Lima1Q9ERG0 A430005L14Rik-201ENSMUST00000058393 1098 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Iqcf4-201ENSMUST00000085111 756 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Rps6ka6-202ENSMUST00000082034 4170 ntAPPRIS P2 TSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm16083-201ENSMUST00000125681 2547 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Atg4c-203ENSMUST00000180278 2792 ntAPPRIS P1 TSL 5 BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Arfgap1-204ENSMUST00000108861 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Gm42913-201ENSMUST00000197936 1853 ntBASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Nap1l1-203ENSMUST00000217908 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Lrrc74b-201ENSMUST00000023442 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Rsph3b-201ENSMUST00000024572 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Mylk-201ENSMUST00000023538 7824 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Zfp810-201ENSMUST00000086278 3238 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Ank2-217ENSMUST00000182610 2231 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Rfx7-203ENSMUST00000183372 1457 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Nmral1-202ENSMUST00000079130 1459 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Entpd8-203ENSMUST00000114380 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Lsg1-201ENSMUST00000117363 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Tmcc3os-201ENSMUST00000146744 2912 ntTSL 1 (best) BASIC12.14□□□□□ -0.47
Lima1Q9ERG0 Daxx-207ENSMUST00000174146 2424 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Coro6-205ENSMUST00000108391 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Pcdhb22-202ENSMUST00000192409 6609 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Zfp1-203ENSMUST00000212072 1930 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gm26872-201ENSMUST00000180862 2261 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Lsp1-201ENSMUST00000018963 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Zfyve1-203ENSMUST00000221919 4420 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Treh-201ENSMUST00000034609 2048 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Retreg1-206ENSMUST00000228306 1430 ntBASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Cd163l1-203ENSMUST00000209398 3437 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gm43172-201ENSMUST00000202139 2137 ntBASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Frmd3-201ENSMUST00000084474 4136 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Slc4a3-202ENSMUST00000124341 7182 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gtf2i-210ENSMUST00000173341 4302 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Col8a1-201ENSMUST00000089332 5108 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Usp22-201ENSMUST00000041683 4434 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Gm6034-201ENSMUST00000097331 1633 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Mbtps1-201ENSMUST00000081381 4195 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 Ankzf1-201ENSMUST00000127625 1167 ntTSL 5 BASIC12.13□□□□□ -0.47
Lima1Q9ERG0 S100a14-201ENSMUST00000164481 915 ntTSL 2 BASIC12.13□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 47.7 ms