Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 P2rx1-201ENSMUST00000021141 2486 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Emx2os-201ENSMUST00000136990 5023 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Padi2-201ENSMUST00000030765 4774 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Gm23270-201ENSMUST00000104055 131 ntBASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Spsb1-202ENSMUST00000105684 1002 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Prr15l-203ENSMUST00000107633 930 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Mrpl2-202ENSMUST00000113429 998 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Pigp-205ENSMUST00000113917 805 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Rbm3-202ENSMUST00000115615 1183 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Rbm3-203ENSMUST00000115616 1225 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 1700012D14Rik-202ENSMUST00000209959 629 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Gm19605-201ENSMUST00000220603 686 ntTSL 3 BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Bace1-201ENSMUST00000034591 6058 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Spata33-202ENSMUST00000212161 2941 ntTSL 2 BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Tyk2-206ENSMUST00000216874 4828 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Pex5-205ENSMUST00000112532 3148 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Sipa1l2-204ENSMUST00000212987 6690 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 4933431M02Rik-201ENSMUST00000203905 1432 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Ushbp1Q8R370 AC157950.1-201ENSMUST00000217561 2168 ntBASIC13.81□□□□□ -0.2
Ushbp1Q8R370 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Nupl1-206ENSMUST00000225111 2936 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Bmp7-201ENSMUST00000009143 3670 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Cct5-201ENSMUST00000022842 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm44089-201ENSMUST00000203624 1930 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm42748-201ENSMUST00000199354 2341 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Trpv6-203ENSMUST00000201471 2304 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm45743-201ENSMUST00000212701 2795 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Myh7-204ENSMUST00000168485 6230 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Chrnd-201ENSMUST00000073252 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Ighv8-9-201ENSMUST00000103533 301 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Ighv8-13-201ENSMUST00000103542 303 ntAPPRIS ALT2 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm12314-201ENSMUST00000118104 538 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm4909-201ENSMUST00000118749 794 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Endov-204ENSMUST00000129327 1184 ntTSL 5 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Fbxw4-203ENSMUST00000160003 387 ntTSL 3 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Tepp-204ENSMUST00000161029 968 ntAPPRIS P4 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Nkx2-2os-202ENSMUST00000184407 458 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm28287-201ENSMUST00000186612 546 ntTSL 5 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gstp-ps-201ENSMUST00000195526 631 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Ighv1-60-201ENSMUST00000195816 405 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm19208-201ENSMUST00000213861 912 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm42890-202ENSMUST00000167642 2566 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Arid5a-203ENSMUST00000115031 3002 ntTSL 2 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Pprc1-201ENSMUST00000062322 5205 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gtf2i-203ENSMUST00000111261 4381 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Tmcc3-204ENSMUST00000121471 2614 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Aknad1-202ENSMUST00000133931 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Tm9sf2-201ENSMUST00000026624 3107 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Fam217b-201ENSMUST00000094251 4541 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Tomt-202ENSMUST00000106970 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Ttc3-202ENSMUST00000119131 3212 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Usp3-211ENSMUST00000174387 1901 ntTSL 5 BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Slc7a11-205ENSMUST00000194462 2419 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 D730001G18Rik-202ENSMUST00000191407 1494 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Nup205-204ENSMUST00000201374 6411 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Gm8038-201ENSMUST00000164674 2044 ntBASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Ushbp1Q8R370 Slc4a2-202ENSMUST00000115047 4264 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Fyttd1-211ENSMUST00000171325 4295 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Slc39a9-204ENSMUST00000217889 2155 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Matn2-203ENSMUST00000226766 3252 ntBASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Astl-204ENSMUST00000179618 2236 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Dnmbp-205ENSMUST00000212396 6100 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Ankrd42-205ENSMUST00000138267 2827 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 St6gal1-201ENSMUST00000023601 4506 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Gm23119-201ENSMUST00000158610 140 ntBASIC13.79□□□□□ -0.2
Ushbp1Q8R370 1700095B10Rik-201ENSMUST00000182349 978 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Gm29019-202ENSMUST00000188623 564 ntTSL 2 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Gm38317-201ENSMUST00000195564 343 ntBASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Gm42997-202ENSMUST00000200321 985 ntBASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Gm45184-201ENSMUST00000206354 955 ntTSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Gm13097-201ENSMUST00000210722 397 ntBASIC13.79□□□□□ -0.2
Ushbp1Q8R370 AC126253.1-202ENSMUST00000226732 835 ntBASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Lnx1-204ENSMUST00000117388 2564 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Txndc5-203ENSMUST00000160653 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 B230398E01Rik-201ENSMUST00000125186 1958 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Epha5-202ENSMUST00000113398 4830 ntTSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Slc25a40-201ENSMUST00000066921 2784 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Gpr85-201ENSMUST00000060442 3661 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Trim50-202ENSMUST00000111180 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Dmac2-201ENSMUST00000077338 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Asap1-201ENSMUST00000023008 4580 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Crybg1-202ENSMUST00000200401 7525 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 C2cd4c-201ENSMUST00000059699 6729 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Ushbp1Q8R370 Oxct1-205ENSMUST00000138927 1743 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Ushbp1Q8R370 Pdik1l-201ENSMUST00000061234 4686 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 77.1 ms