Protein–RNA interactions for Protein: Q8CCB4

Vps53, Vacuolar protein sorting-associated protein 53 homolog, mousemouse

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps53Q8CCB4 Kpna1-201ENSMUST00000004054 5039 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Gm31518-201ENSMUST00000211925 2548 ntTSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Gm12012-201ENSMUST00000118857 1066 ntBASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Cryzl1-204ENSMUST00000122254 845 ntTSL 3 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Gm15979-201ENSMUST00000149741 590 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Mocs2-215ENSMUST00000184335 646 ntTSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Dmrt1i-203ENSMUST00000197311 718 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Cdc34-208ENSMUST00000219791 799 ntTSL 3 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 AC124171.1-201ENSMUST00000221151 567 ntTSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Cym-201ENSMUST00000029504 1236 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Nmral1-201ENSMUST00000074970 1155 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Rab11fip3-203ENSMUST00000122103 5015 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Nfyc-203ENSMUST00000118902 1887 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Tmem56-204ENSMUST00000135818 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Med28-205ENSMUST00000156481 4560 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Ly75-202ENSMUST00000112533 6901 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Ermard-202ENSMUST00000061688 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Tcea1-201ENSMUST00000081551 2547 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Cux1-204ENSMUST00000175975 10945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Vps53Q8CCB4 Gm10451-201ENSMUST00000101281 1598 ntTSL 2 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Synpo-211ENSMUST00000155195 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Rpl22-208ENSMUST00000188151 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Col24a1-201ENSMUST00000029848 7143 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Esrp1-203ENSMUST00000108311 3864 ntTSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gcn1l1-201ENSMUST00000064454 8555 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Pgm3-201ENSMUST00000070064 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Prex1-202ENSMUST00000099080 5818 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm37391-201ENSMUST00000194891 2318 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Clic3-202ENSMUST00000114265 808 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 C330007P06Rik-203ENSMUST00000115249 1145 ntTSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm26973-201ENSMUST00000182105 696 ntTSL 3 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Bloc1s2-ps-201ENSMUST00000183232 432 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm27341-201ENSMUST00000183570 106 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm2260-201ENSMUST00000184965 657 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm44124-201ENSMUST00000204159 472 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Calca-204ENSMUST00000205714 416 ntTSL 2 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm44992-206ENSMUST00000209313 1261 ntTSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm45484-201ENSMUST00000210310 1141 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm18615-201ENSMUST00000222919 1031 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Tmem210-201ENSMUST00000028340 516 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Psma7-201ENSMUST00000029082 914 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Eef1d-203ENSMUST00000089680 973 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm44292-201ENSMUST00000205194 2364 ntBASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Apc2-201ENSMUST00000020349 9074 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Mapk8ip3-202ENSMUST00000115228 5424 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 C230034O21Rik-201ENSMUST00000153659 2836 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Dppa4-202ENSMUST00000096045 1534 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Tsta3-201ENSMUST00000023231 1311 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Gdf9-201ENSMUST00000018382 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Hpse2-201ENSMUST00000099428 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Zeb2-212ENSMUST00000176438 9124 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Hspa4l-201ENSMUST00000108086 2744 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Chd3-202ENSMUST00000108661 7261 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Phldb1-218ENSMUST00000156918 3485 ntTSL 5 BASIC14.34□□□□□ -0.11
Vps53Q8CCB4 Rab11a-208ENSMUST00000172298 2336 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Vps53Q8CCB4 Senp3-201ENSMUST00000005336 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Vps53Q8CCB4 Fitm2-201ENSMUST00000109418 3967 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Vps53Q8CCB4 Pxn-214ENSMUST00000212819 1689 ntTSL 5 BASIC14.33□□□□□ -0.11
Vps53Q8CCB4 Limch1-204ENSMUST00000118242 5050 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Vps53Q8CCB4 Lmbr1-201ENSMUST00000055195 4926 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Map4k1-203ENSMUST00000208227 2720 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Map4k1-201ENSMUST00000085835 2724 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Sfmbt1-206ENSMUST00000228006 3299 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Clca2-203ENSMUST00000198993 2774 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Tktl2-201ENSMUST00000002025 2021 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Styxl1-205ENSMUST00000111164 1243 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Cox6c-203ENSMUST00000153512 738 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Gm22902-201ENSMUST00000158488 302 ntBASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Gm26636-201ENSMUST00000181696 1115 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Gm6652-201ENSMUST00000186414 1070 ntBASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Gm32025-201ENSMUST00000217960 307 ntBASIC14.33□□□□□ -0.12
Vps53Q8CCB4 AC126253.1-202ENSMUST00000226732 835 ntBASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Gm10371-202ENSMUST00000228010 1081 ntBASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 1700029I15Rik-201ENSMUST00000054316 364 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Ssc4d-201ENSMUST00000054895 1191 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Zfp932-201ENSMUST00000099484 451 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Phf21a-209ENSMUST00000111297 6188 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Phf21a-201ENSMUST00000044036 6187 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Ripor1-201ENSMUST00000043531 4108 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Bysl-201ENSMUST00000024783 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Egr2-202ENSMUST00000105438 2864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Lrfn3-201ENSMUST00000046351 2886 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Rap1gds1-202ENSMUST00000098574 3669 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Fam173b-203ENSMUST00000161061 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Ackr4-202ENSMUST00000076147 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Vps53Q8CCB4 Gimap3-202ENSMUST00000204036 2145 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 52.4 ms