Protein–RNA interactions for Protein: Q8BI79

Ccdc40, Coiled-coil domain-containing protein 40, mousemouse

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc40Q8BI79 Fam241b-202ENSMUST00000064050 1096 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Rpl10l-201ENSMUST00000081908 1023 ntAPPRIS P1 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Epha5-206ENSMUST00000113406 4606 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Recql-201ENSMUST00000032370 2112 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Pja1-204ENSMUST00000113797 1676 ntAPPRIS ALT2 TSL 2 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Nfe2l1-211ENSMUST00000167149 4596 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 H2-T22-201ENSMUST00000058801 1534 ntAPPRIS ALT2 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Gm12132-201ENSMUST00000130945 1391 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Olfr283-202ENSMUST00000215830 2392 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Lig1-201ENSMUST00000098814 3091 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Zfp112-204ENSMUST00000215113 2628 ntAPPRIS ALT2 TSL 5 BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Sesn2-201ENSMUST00000030724 3475 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Bhlha15-201ENSMUST00000060747 3494 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
Ccdc40Q8BI79 Zmiz1-208ENSMUST00000162645 7482 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Myo16-203ENSMUST00000207477 7169 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Pou2f1-209ENSMUST00000160908 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 4930581F22Rik-201ENSMUST00000093873 2402 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Snrk-203ENSMUST00000120173 4758 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Zbtb49-201ENSMUST00000094833 2978 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Nek1-209ENSMUST00000211672 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Col14a1-201ENSMUST00000023053 6457 ntAPPRIS ALT1 TSL 5 BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Olfr56-204ENSMUST00000203149 1808 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Derl2-202ENSMUST00000108523 884 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Nsg2-203ENSMUST00000109409 641 ntTSL 2 BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Gm12384-201ENSMUST00000119228 919 ntBASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Gm13394-201ENSMUST00000121658 1000 ntBASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Gm5863-201ENSMUST00000121760 1008 ntBASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Syce3-202ENSMUST00000167959 480 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Gm8835-201ENSMUST00000173096 1169 ntBASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 AC158516.1-201ENSMUST00000213921 205 ntTSL 5 BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Spc24-204ENSMUST00000216057 627 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Akr1b7-201ENSMUST00000007449 1281 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Anp32e-202ENSMUST00000165307 3274 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Etv3-205ENSMUST00000170036 5127 ntAPPRIS P2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Rasa3-201ENSMUST00000117551 4404 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Ikbip-201ENSMUST00000020149 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Alg14-201ENSMUST00000039442 2037 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Pdlim5-201ENSMUST00000029941 5016 ntAPPRIS P3 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Polm-202ENSMUST00000109837 2697 ntTSL 5 BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Xpot-203ENSMUST00000218004 6005 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Fads6-201ENSMUST00000056153 4951 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 1110046J04Rik-202ENSMUST00000180906 2776 ntBASIC12.91□□□□□ -0.34
Ccdc40Q8BI79 Asb8-204ENSMUST00000143400 2226 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Sass6-204ENSMUST00000197335 2458 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Mast1-202ENSMUST00000119820 2078 ntTSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Slc38a10-216ENSMUST00000179094 4052 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Helq-201ENSMUST00000044684 3689 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Plekhn1-202ENSMUST00000105571 2004 ntTSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Zfp41-201ENSMUST00000054555 3736 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 4933436I20Rik-202ENSMUST00000190615 1509 ntTSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Etfrf1-206ENSMUST00000111725 872 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Unc50-202ENSMUST00000114925 1094 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Gm9630-201ENSMUST00000178304 885 ntBASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Tmem205-202ENSMUST00000178988 862 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Gm5745-201ENSMUST00000183748 313 ntBASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 2010310C07Rik-202ENSMUST00000190889 842 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Ssr2-202ENSMUST00000192495 620 ntTSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Gm38092-201ENSMUST00000195600 653 ntBASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 AC130829.1-201ENSMUST00000221548 494 ntBASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Rpl18a-201ENSMUST00000054220 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 1500011B03Rik-201ENSMUST00000061251 579 ntAPPRIS P5 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Pepd-201ENSMUST00000075068 1881 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Tanc2-202ENSMUST00000100330 11855 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Grid1-201ENSMUST00000043349 5720 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Map4-205ENSMUST00000165876 5573 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Cdkl2-203ENSMUST00000113140 2559 ntAPPRIS P4 TSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Trmt61b-202ENSMUST00000137830 2572 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Akr1b3-201ENSMUST00000102980 1387 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Camk2d-216ENSMUST00000163226 4204 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Sh3glb2-202ENSMUST00000100215 1749 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Col14a1-202ENSMUST00000110217 6457 ntAPPRIS ALT1 TSL 5 BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Hspa9-201ENSMUST00000025217 3049 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Dock11-201ENSMUST00000033419 6665 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Gm8706-201ENSMUST00000197372 1491 ntBASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Pacrg-201ENSMUST00000041463 1475 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Prom2-201ENSMUST00000028855 4796 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Pigh-203ENSMUST00000217998 2868 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
Ccdc40Q8BI79 Vmn1r45-201ENSMUST00000054202 3341 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.35
Ccdc40Q8BI79 Fam171a1-201ENSMUST00000062934 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.35
Ccdc40Q8BI79 Gm32479-201ENSMUST00000204226 2739 ntTSL 2 BASIC12.9□□□□□ -0.35
Ccdc40Q8BI79 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Fn1-214ENSMUST00000188894 8043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Igf2-204ENSMUST00000105936 3970 ntAPPRIS P1 TSL 2 BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Med4-201ENSMUST00000022705 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Wdcp-205ENSMUST00000220215 2202 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Retreg1-206ENSMUST00000228306 1430 ntBASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Chrna3-201ENSMUST00000034851 4358 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Kdm4a-202ENSMUST00000097911 4550 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Zp1-201ENSMUST00000025641 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Slc30a8-201ENSMUST00000037240 1971 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Abi1-203ENSMUST00000093171 2411 ntAPPRIS ALT1 TSL 5 BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Eef2k-203ENSMUST00000106488 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
Ccdc40Q8BI79 Sgce-201ENSMUST00000004750 1703 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 39.9 ms