Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 1700040D17Rik-201ENSMUST00000181305 998 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 1700120C18Rik-201ENSMUST00000182952 985 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Gm28172-201ENSMUST00000189880 506 ntTSL 3 BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Gm44882-201ENSMUST00000205702 802 ntBASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Gm45484-201ENSMUST00000210310 1141 ntBASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 AC098716.1-201ENSMUST00000213527 703 ntBASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Olfr667-201ENSMUST00000071362 981 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Olfr666-201ENSMUST00000081116 957 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Gm26543-201ENSMUST00000180729 2221 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Samd4-201ENSMUST00000022386 4564 ntAPPRIS P4 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Plpbp-201ENSMUST00000033875 3603 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Camsap3-202ENSMUST00000171962 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Slc39a9-208ENSMUST00000219706 5427 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Hnrnpf-209ENSMUST00000180020 2280 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 E2f7-209ENSMUST00000174857 2865 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Trio-201ENSMUST00000090247 11495 ntAPPRIS P1 TSL 5 BASIC13.18□□□□□ -0.3
Upf3bQ3ULL6 Cog3-203ENSMUST00000227473 4197 ntBASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Dtx1-201ENSMUST00000031607 4035 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Sox7-201ENSMUST00000079652 3299 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Gm37105-201ENSMUST00000192251 2085 ntBASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 AC122197.2-201ENSMUST00000219196 1635 ntBASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Gm20721-201ENSMUST00000168292 1484 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Nr3c1-201ENSMUST00000025300 4989 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Capn8-202ENSMUST00000168514 2483 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Shisa9-201ENSMUST00000023138 4326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Trpc2-201ENSMUST00000124189 2874 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Wdr59-201ENSMUST00000034437 4896 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Fam110a-203ENSMUST00000109864 1591 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Mmp21-202ENSMUST00000122136 1599 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Nup160-201ENSMUST00000057481 5684 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 0610037L13Rik-205ENSMUST00000119394 741 ntTSL 3 BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Gm17227-202ENSMUST00000170286 1016 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Gm26542-201ENSMUST00000180443 1235 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Txndc17-201ENSMUST00000021158 981 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 CT009486.1-201ENSMUST00000222047 661 ntTSL 3 BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Ctrc-201ENSMUST00000037059 951 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Gm10728-201ENSMUST00000194292 1829 ntBASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Erich5-201ENSMUST00000060894 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Hgs-202ENSMUST00000106203 2901 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Hgs-201ENSMUST00000026900 2908 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Hipk4-201ENSMUST00000037134 2926 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Hnf1b-201ENSMUST00000021016 2759 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 AC160405.1-201ENSMUST00000218207 1545 ntBASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Cog6-201ENSMUST00000036665 3182 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Sdad1-201ENSMUST00000031364 5020 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Tns2-202ENSMUST00000169627 4707 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Smpd3-201ENSMUST00000067512 5148 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Upf3bQ3ULL6 Gm7049-201ENSMUST00000223520 1712 ntBASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Myh2-203ENSMUST00000170159 6083 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Zbtb16-201ENSMUST00000093852 5114 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Kdelr1-201ENSMUST00000002855 1599 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Stx11-201ENSMUST00000042861 4173 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Pygo1-201ENSMUST00000038489 7916 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Shbg-201ENSMUST00000005334 1419 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Runx1-201ENSMUST00000023673 5861 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gm24934-201ENSMUST00000103764 111 ntBASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gm24255-201ENSMUST00000104481 128 ntBASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gm11595-201ENSMUST00000107440 1200 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gm14381-201ENSMUST00000122105 414 ntBASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Stard10-207ENSMUST00000173270 670 ntTSL 5 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gm7783-201ENSMUST00000204795 781 ntBASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gm8712-201ENSMUST00000221090 701 ntBASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 AC122371.3-201ENSMUST00000223402 1061 ntBASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Olfr368-201ENSMUST00000053990 985 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Psen1-201ENSMUST00000041806 2690 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Cyp2t4-202ENSMUST00000164093 1512 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Gbf1-201ENSMUST00000026254 6450 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Map2k4-201ENSMUST00000046963 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Extl3-203ENSMUST00000225633 6013 ntAPPRIS P1 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Mgme1-202ENSMUST00000110027 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 A630014C17Rik-201ENSMUST00000150973 2984 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Map3k4-201ENSMUST00000089058 5305 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Rabep2-202ENSMUST00000106407 2234 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Cyb561d1-201ENSMUST00000065664 4058 ntAPPRIS ALT1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 4933440M02Rik-203ENSMUST00000206609 1747 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Olfr288-202ENSMUST00000165379 2083 ntAPPRIS P1 TSL 2 BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Ldb3-201ENSMUST00000022327 5119 ntAPPRIS P4 TSL 1 (best) BASIC13.16□□□□□ -0.3
Upf3bQ3ULL6 Tspan32-203ENSMUST00000082008 1587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Pck2-205ENSMUST00000226352 2784 ntBASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Pcdhac1-201ENSMUST00000007584 5419 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 H2-Ob-204ENSMUST00000173764 1319 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Asph-202ENSMUST00000078139 6694 ntAPPRIS P3 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Hnrnph2-202ENSMUST00000059297 2364 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Heatr3-202ENSMUST00000121949 3086 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Patj-201ENSMUST00000030290 2495 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Cramp1l-201ENSMUST00000073337 7517 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Sv2a-201ENSMUST00000035371 4334 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Xylb-201ENSMUST00000039610 3383 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Tfe3-205ENSMUST00000115678 2658 ntTSL 5 BASIC13.15□□□□□ -0.3
Upf3bQ3ULL6 Gm13124-201ENSMUST00000105748 1221 ntAPPRIS P1 TSL 5 BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 38.9 ms