Protein–RNA interactions for Protein: Q04887

Sox9, Transcription factor SOX-9, mousemouse

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox9Q04887 Krtap4-2-201ENSMUST00000058987 974 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
Sox9Q04887 Nlrp6-204ENSMUST00000184560 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Mtmr2-208ENSMUST00000155679 3088 ntTSL 5 BASIC12.73□□□□□ -0.37
Sox9Q04887 Ppp2r5c-201ENSMUST00000084985 1847 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
Sox9Q04887 Prpf38b-201ENSMUST00000029480 3026 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Myo1d-201ENSMUST00000041065 5354 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
Sox9Q04887 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Fen1-201ENSMUST00000025651 2341 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Ap2a1-203ENSMUST00000166972 3449 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Lnx1-209ENSMUST00000153543 2208 ntTSL 5 BASIC12.73□□□□□ -0.37
Sox9Q04887 Cd3eap-201ENSMUST00000047036 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Rpusd2-201ENSMUST00000028796 2706 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Prkx-202ENSMUST00000114044 2639 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Thpo-201ENSMUST00000076422 1587 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Lztr1-201ENSMUST00000023444 3112 ntAPPRIS P2 TSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Pdgfra-205ENSMUST00000201711 4088 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
Sox9Q04887 Tbcel-206ENSMUST00000138506 1534 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
Sox9Q04887 Aspm-205ENSMUST00000200083 6072 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Slc25a45-206ENSMUST00000155697 1960 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Tbc1d9b-201ENSMUST00000093138 4407 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Gm44401-201ENSMUST00000204462 2375 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 Gm36855-203ENSMUST00000216660 1406 ntTSL 5 BASIC12.72□□□□□ -0.37
Sox9Q04887 Phka1-206ENSMUST00000122022 6115 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sox9Q04887 Phka1-202ENSMUST00000052012 6115 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 1300017J02Rik-202ENSMUST00000123530 1874 ntTSL 5 BASIC12.72□□□□□ -0.37
Sox9Q04887 Sass6-206ENSMUST00000198386 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Unc5b-203ENSMUST00000218637 3653 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Ccr4-202ENSMUST00000215425 1382 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Sbk1-201ENSMUST00000056028 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Vax2os-203ENSMUST00000155159 4063 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Cdyl-202ENSMUST00000163595 3575 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Themis3-201ENSMUST00000024914 1797 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Zfp367-201ENSMUST00000059817 3532 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Zfp444-204ENSMUST00000108567 5104 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Gm12990-201ENSMUST00000120372 468 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC12.72□□□□□ -0.37
Sox9Q04887 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC12.72□□□□□ -0.37
Sox9Q04887 4930405O22Rik-201ENSMUST00000164605 954 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Hspb9-202ENSMUST00000169833 726 ntAPPRIS P2 BASIC12.72□□□□□ -0.37
Sox9Q04887 Ighv2-1-201ENSMUST00000170946 353 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 Ppy-201ENSMUST00000017460 500 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Gm28836-201ENSMUST00000185842 633 ntTSL 2 BASIC12.72□□□□□ -0.37
Sox9Q04887 Iqcf3-202ENSMUST00000186668 633 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
Sox9Q04887 Gm9116-201ENSMUST00000192400 1018 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 Gm42629-201ENSMUST00000199063 1102 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 Fcer2a-206ENSMUST00000208438 930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Fcer2a-208ENSMUST00000208603 930 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Gm18204-201ENSMUST00000209835 793 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 Gm40578-201ENSMUST00000220837 390 ntTSL 2 BASIC12.72□□□□□ -0.37
Sox9Q04887 AC134860.1-201ENSMUST00000224867 660 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 CT009536.2-201ENSMUST00000225370 665 ntBASIC12.72□□□□□ -0.37
Sox9Q04887 Ly6i-201ENSMUST00000023250 1156 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 1700029P11Rik-201ENSMUST00000074608 1024 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
Sox9Q04887 Uimc1-202ENSMUST00000099496 1678 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Ildr2-201ENSMUST00000111416 8251 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Mfge8-202ENSMUST00000107409 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Tmem62-202ENSMUST00000110686 2417 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Snhg17-203ENSMUST00000141809 1553 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Atg16l1-201ENSMUST00000027512 3130 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Gigyf2-201ENSMUST00000027475 5724 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Ccdc159-202ENSMUST00000170304 1519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Slc6a7-201ENSMUST00000025520 3342 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 Map3k20-201ENSMUST00000090824 3334 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
Sox9Q04887 B230206H07Rik-202ENSMUST00000134845 3269 ntTSL 5 BASIC12.72□□□□□ -0.37
Sox9Q04887 Gm43156-201ENSMUST00000202338 2127 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Tdg-208ENSMUST00000151390 3502 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Ncam2-201ENSMUST00000037785 4893 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Xrcc3-201ENSMUST00000021715 2422 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Obsl1-201ENSMUST00000113565 3379 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Hadhb-202ENSMUST00000114783 2045 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Eloa-201ENSMUST00000030427 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Gm8798-201ENSMUST00000211877 1661 ntBASIC12.71□□□□□ -0.37
Sox9Q04887 Ssc5d-201ENSMUST00000057612 4348 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Add2-208ENSMUST00000203786 2289 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Plekha5-212ENSMUST00000204876 1928 ntTSL 5 BASIC12.71□□□□□ -0.37
Sox9Q04887 Gm11663-201ENSMUST00000117888 290 ntBASIC12.71□□□□□ -0.37
Sox9Q04887 Gm15566-201ENSMUST00000121130 590 ntBASIC12.71□□□□□ -0.37
Sox9Q04887 Gm13523-201ENSMUST00000151820 488 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Gm16312-201ENSMUST00000156285 362 ntTSL 3 BASIC12.71□□□□□ -0.37
Sox9Q04887 Siglech-205ENSMUST00000165045 1062 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Gm18304-201ENSMUST00000189162 546 ntBASIC12.71□□□□□ -0.37
Sox9Q04887 Gm29088-201ENSMUST00000189363 581 ntTSL 3 BASIC12.71□□□□□ -0.37
Sox9Q04887 4930589O11Rik-201ENSMUST00000200768 920 ntBASIC12.71□□□□□ -0.37
Sox9Q04887 Cdipt-202ENSMUST00000205830 805 ntTSL 2 BASIC12.71□□□□□ -0.37
Sox9Q04887 Gm45594-201ENSMUST00000211717 241 ntBASIC12.71□□□□□ -0.37
Sox9Q04887 Gm3619-201ENSMUST00000219947 775 ntBASIC12.71□□□□□ -0.37
Sox9Q04887 Gm36074-201ENSMUST00000221383 591 ntTSL 5 BASIC12.71□□□□□ -0.37
Sox9Q04887 Odf3-201ENSMUST00000026555 1128 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Cldn17-201ENSMUST00000069549 1172 ntAPPRIS P1 BASIC12.71□□□□□ -0.37
Sox9Q04887 Ifi27-205ENSMUST00000085065 977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
Sox9Q04887 Sptb-201ENSMUST00000021458 10394 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
Sox9Q04887 Dok7-203ENSMUST00000114270 2779 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC12.71□□□□□ -0.38
Sox9Q04887 Nhs-202ENSMUST00000087085 8805 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 Alox12b-201ENSMUST00000036424 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
Sox9Q04887 Ccdc125-201ENSMUST00000057325 2413 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
Retrieved 100 of 76,532 protein–RNA pairs in 102.3 ms