Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Gm35339-201ENSMUST00000208833 5090 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
Col6a1Q04857 Slc35d1-203ENSMUST00000150285 4242 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 C530008M17Rik-202ENSMUST00000120639 6826 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 C530008M17Rik-211ENSMUST00000163347 6835 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Chst3-201ENSMUST00000068690 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Spock3-201ENSMUST00000093480 3024 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
Col6a1Q04857 Sltm-206ENSMUST00000216816 3755 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
Col6a1Q04857 Yaf2-201ENSMUST00000080299 1676 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Gcdh-201ENSMUST00000003907 2167 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Clcn3-201ENSMUST00000004430 4175 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Cbx6-202ENSMUST00000109625 3056 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Wdr45-204ENSMUST00000115689 1568 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Bcl7a-201ENSMUST00000031391 4718 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Ccr6-203ENSMUST00000166348 1310 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Enpp5-203ENSMUST00000154166 2490 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Col6a1Q04857 Dnajb12-203ENSMUST00000142819 1495 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm26823-201ENSMUST00000181425 2361 ntTSL 5 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Zfp385c-201ENSMUST00000103119 2766 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Pphln1-202ENSMUST00000068457 3816 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Stk33-204ENSMUST00000121748 2295 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm7114-201ENSMUST00000190159 1789 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 Ntsr1-202ENSMUST00000170448 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Fgfr3-209ENSMUST00000164207 4150 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Olfr1411-203ENSMUST00000216444 1901 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Eif4g3-204ENSMUST00000105830 3252 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Olfr533-204ENSMUST00000216258 2874 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Ppip5k2-202ENSMUST00000112845 6239 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Cela3b-201ENSMUST00000102522 926 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm25880-201ENSMUST00000104331 132 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 Cdc42se1-204ENSMUST00000107201 907 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Eif5a-206ENSMUST00000108609 849 ntAPPRIS P1 TSL 3 BASIC13.61□□□□□ -0.23
Col6a1Q04857 5730416F02Rik-201ENSMUST00000120648 812 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 Mir1901-201ENSMUST00000122616 78 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 Msrb3-202ENSMUST00000130950 561 ntTSL 3 BASIC13.61□□□□□ -0.23
Col6a1Q04857 B230206L02Rik-202ENSMUST00000132584 695 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm12953-201ENSMUST00000138426 751 ntTSL 2 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Lypd1-203ENSMUST00000159529 989 ntTSL 2 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Lmo3-202ENSMUST00000161450 1048 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm17040-201ENSMUST00000168672 548 ntTSL 3 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Rpl41-206ENSMUST00000177163 544 ntAPPRIS P2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm8492-201ENSMUST00000182375 987 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm4482-201ENSMUST00000200876 742 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 Aprt-203ENSMUST00000211823 590 ntTSL 3 BASIC13.61□□□□□ -0.23
Col6a1Q04857 AC160052.1-201ENSMUST00000213173 1248 ntTSL 5 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm4797-201ENSMUST00000219075 1283 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 4930562F07Rik-201ENSMUST00000028061 830 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Ginm1-202ENSMUST00000065124 300 ntBASIC13.61□□□□□ -0.23
Col6a1Q04857 Elovl1-202ENSMUST00000067896 1137 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Rtkn2-203ENSMUST00000117086 2246 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Gm14342-201ENSMUST00000137629 2119 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Eif5b-201ENSMUST00000027252 7797 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
Col6a1Q04857 Igsf23-204ENSMUST00000208974 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Nphs1os-201ENSMUST00000152625 1339 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Prss30-201ENSMUST00000024936 1470 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Ppp1r16b-201ENSMUST00000045503 6408 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
Col6a1Q04857 Itgal-201ENSMUST00000106306 5195 ntAPPRIS P4 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Pde4d-220ENSMUST00000177907 2244 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Kif1c-204ENSMUST00000137119 6596 ntAPPRIS P2 TSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Set-202ENSMUST00000102866 2824 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Begain-204ENSMUST00000209829 3272 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 H2-T22-202ENSMUST00000077960 1694 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Ubqln1-202ENSMUST00000076454 3561 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Tspan9-202ENSMUST00000112171 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Krtap4-8-201ENSMUST00000107439 983 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Olfr269-ps1-201ENSMUST00000120783 302 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm10785-201ENSMUST00000156242 1583 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm7568-202ENSMUST00000160446 709 ntTSL 3 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm16339-201ENSMUST00000160954 929 ntTSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gng13-202ENSMUST00000172002 719 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm28324-201ENSMUST00000187913 264 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm37246-201ENSMUST00000192665 835 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Qdpr-209ENSMUST00000198258 1172 ntTSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Rpl7a-ps2-201ENSMUST00000200554 774 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm45398-201ENSMUST00000210561 165 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 AC153830.1-201ENSMUST00000218522 594 ntTSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Slc6a18-208ENSMUST00000222029 2005 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 AC125209.1-201ENSMUST00000225812 766 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Tff1-201ENSMUST00000024831 478 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Immp1l-201ENSMUST00000037499 955 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gjb5-201ENSMUST00000046498 1721 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Cox19-201ENSMUST00000049630 2461 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Snf8-201ENSMUST00000006217 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm10076-201ENSMUST00000073238 384 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Cox5a-201ENSMUST00000000090 645 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm5965-201ENSMUST00000009191 588 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Ripor3-201ENSMUST00000099073 3580 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Pianp-206ENSMUST00000162000 2396 ntAPPRIS ALT2 TSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Klhl38-201ENSMUST00000022985 2212 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Rnf44-218ENSMUST00000177950 3941 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Sh3gl3-206ENSMUST00000179318 1489 ntTSL 5 BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm13812-201ENSMUST00000118061 1347 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm13810-201ENSMUST00000118584 1347 ntBASIC13.6□□□□□ -0.23
Col6a1Q04857 Edc3-201ENSMUST00000043990 5708 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Phf8-205ENSMUST00000112668 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Serpinh1-203ENSMUST00000207849 2128 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Gm16741-201ENSMUST00000145085 1818 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Bcl11a-202ENSMUST00000109514 5989 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Col6a1Q04857 Lman1l-202ENSMUST00000093832 1685 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 58.5 ms