Protein–RNA interactions for Protein: P39061

Col18a1, Collagen alpha-1(XVIII) chain, mousemouse

Predictions only

Length 1,774 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col18a1P39061 Gm12052-201ENSMUST00000142151 933 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 4931440J10Rik-201ENSMUST00000181344 891 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Gm44106-201ENSMUST00000203153 1599 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 AC156790.2-201ENSMUST00000227115 568 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Hspb11-201ENSMUST00000046558 608 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Itsn1-205ENSMUST00000113996 5147 ntTSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Kifc1-204ENSMUST00000173492 2350 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Pycr1-206ENSMUST00000170556 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Serpina1b-203ENSMUST00000186166 1762 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Tmem218-201ENSMUST00000034632 2619 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Kcnj12-201ENSMUST00000041944 2459 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Gm45643-201ENSMUST00000211364 1484 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Gm45266-201ENSMUST00000210111 2173 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Ccdc88b-201ENSMUST00000113440 4959 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Traf3ip3-212ENSMUST00000192020 1854 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 AC238940.1-201ENSMUST00000225106 1858 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Flt3-201ENSMUST00000049324 3657 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Mcm9-206ENSMUST00000220007 3513 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Map1b-203ENSMUST00000223725 2669 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Lamp5-201ENSMUST00000057503 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Mir453-201ENSMUST00000104732 82 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Tmem91-203ENSMUST00000108405 550 ntTSL 3 BASIC15.87■□□□□ 0.13
Col18a1P39061 Cat-202ENSMUST00000111168 779 ntTSL 3 BASIC15.87■□□□□ 0.13
Col18a1P39061 Nifk-202ENSMUST00000112688 849 ntTSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Gm16219-201ENSMUST00000120096 274 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Gm14441-201ENSMUST00000121960 540 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Gm12666-201ENSMUST00000123179 764 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Gm11944-201ENSMUST00000152576 873 ntTSL 3 BASIC15.87■□□□□ 0.13
Col18a1P39061 Gm4982-201ENSMUST00000160440 1098 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Marc1-203ENSMUST00000189492 1239 ntTSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Gm30946-201ENSMUST00000198288 724 ntBASIC15.87■□□□□ 0.13
Col18a1P39061 Tdpoz3-201ENSMUST00000081780 1098 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Col18a1P39061 4631405J19Rik-201ENSMUST00000099699 1225 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Ncald-211ENSMUST00000168992 3538 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Oprm1-222ENSMUST00000135502 1363 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
Col18a1P39061 Sh3kbp1-201ENSMUST00000073094 2280 ntTSL 5 BASIC15.87■□□□□ 0.13
Col18a1P39061 Pou3f4-201ENSMUST00000078229 2928 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Col18a1P39061 Agt-201ENSMUST00000063278 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Dusp22-202ENSMUST00000095914 3015 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Celf4-201ENSMUST00000025117 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Sgsm3-208ENSMUST00000139517 2996 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Naaa-201ENSMUST00000113102 2414 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 2610037D02Rik-201ENSMUST00000180852 2449 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Nelfcd-202ENSMUST00000109075 2279 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Col17a1-201ENSMUST00000026045 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Gm11269-201ENSMUST00000157011 595 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Slc1a3-208ENSMUST00000157065 728 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Tnnt1-206ENSMUST00000163710 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Mir133a-1hg-201ENSMUST00000179771 395 ntTSL 3 BASIC15.86■□□□□ 0.13
Col18a1P39061 P4htm-204ENSMUST00000193621 1297 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Olfr1380-201ENSMUST00000204300 938 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
Col18a1P39061 Rhno1-207ENSMUST00000223237 1081 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
Col18a1P39061 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Gm42432-201ENSMUST00000197902 1617 ntBASIC15.86■□□□□ 0.13
Col18a1P39061 Synj2-210ENSMUST00000115791 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Phactr3-202ENSMUST00000103066 2680 ntAPPRIS P4 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 4930555A03Rik-201ENSMUST00000196052 1556 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Col18a1P39061 Tmem94-202ENSMUST00000103033 5238 ntAPPRIS P2 TSL 2 BASIC15.86■□□□□ 0.13
Col18a1P39061 Rnf10-201ENSMUST00000040555 3106 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Col18a1P39061 Gm9920-204ENSMUST00000148544 2752 ntTSL 2 BASIC15.85■□□□□ 0.13
Col18a1P39061 Spert-203ENSMUST00000165569 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Gm22937-201ENSMUST00000103954 131 ntBASIC15.85■□□□□ 0.13
Col18a1P39061 Gm23745-201ENSMUST00000104230 125 ntBASIC15.85■□□□□ 0.13
Col18a1P39061 Rpl35a-205ENSMUST00000115079 510 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
Col18a1P39061 Gm13284-201ENSMUST00000121020 547 ntBASIC15.85■□□□□ 0.13
Col18a1P39061 Nhp2-202ENSMUST00000127405 1042 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Gm13272-201ENSMUST00000179425 811 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
Col18a1P39061 Mir6953-201ENSMUST00000184745 68 ntBASIC15.85■□□□□ 0.13
Col18a1P39061 Gm28096-201ENSMUST00000191391 824 ntTSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Gm29808-201ENSMUST00000194419 468 ntBASIC15.85■□□□□ 0.13
Col18a1P39061 1700003I16Rik-201ENSMUST00000205198 1058 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 CT030170.2-201ENSMUST00000223267 126 ntBASIC15.85■□□□□ 0.13
Col18a1P39061 Cib4-201ENSMUST00000065486 769 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Fam57b-203ENSMUST00000205324 1915 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Galns-203ENSMUST00000212319 2111 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Slc29a1-209ENSMUST00000166119 1598 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Jade1-204ENSMUST00000170711 2896 ntTSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Gm15609-201ENSMUST00000155610 2960 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Gfi1b-201ENSMUST00000028156 1681 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Cercam-201ENSMUST00000047521 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Gm10433-202ENSMUST00000146364 1984 ntTSL 2 BASIC15.85■□□□□ 0.13
Col18a1P39061 G3bp2-202ENSMUST00000164378 3026 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Bcl6-201ENSMUST00000023151 3525 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Lrrc18-204ENSMUST00000120951 1511 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Zfp618-202ENSMUST00000064814 2868 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Ahcyl2-201ENSMUST00000064872 2019 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
Col18a1P39061 Nars-201ENSMUST00000025483 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Arl4a-205ENSMUST00000146905 3710 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Col18a1P39061 Ostm1-202ENSMUST00000105497 770 ntTSL 2 BASIC15.85■□□□□ 0.13
Col18a1P39061 Styxl1-203ENSMUST00000111162 726 ntTSL 5 BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms