Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Gm10432-202ENSMUST00000223300 4791 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm42372-201ENSMUST00000206129 5067 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
Cdx1P18111 Calhm2-201ENSMUST00000035822 2458 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Atp6v0a1-210ENSMUST00000168757 3967 ntAPPRIS ALT1 TSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Dnmt3c-201ENSMUST00000119996 2223 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
Cdx1P18111 Psapl1-201ENSMUST00000052224 2548 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
Cdx1P18111 Zfp251-201ENSMUST00000080406 3497 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Zfp114-203ENSMUST00000206547 3154 ntAPPRIS P2 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 1110051M20Rik-203ENSMUST00000102594 1977 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Mfsd4a-207ENSMUST00000159038 1957 ntAPPRIS P2 TSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Gm9200-201ENSMUST00000118513 1354 ntBASIC9.99□□□□□ -0.81
Cdx1P18111 A1cf-202ENSMUST00000224304 2968 ntAPPRIS ALT1 BASIC9.99□□□□□ -0.81
Cdx1P18111 Lgr5-206ENSMUST00000172806 2652 ntTSL 5 BASIC9.99□□□□□ -0.81
Cdx1P18111 Zscan10-201ENSMUST00000095595 2698 ntAPPRIS P3 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Mrpl44-201ENSMUST00000027464 1424 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Pkib-203ENSMUST00000095668 3311 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
Cdx1P18111 Gaa-201ENSMUST00000026666 3363 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Cnbd2-202ENSMUST00000073942 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Dnajb5-203ENSMUST00000098112 3093 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Ckmt2-201ENSMUST00000022122 1486 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Abcg4-201ENSMUST00000034648 3476 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Camsap3-209ENSMUST00000207970 3817 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Satb1-208ENSMUST00000144331 6243 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Gm45501-201ENSMUST00000211468 2526 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 F7-201ENSMUST00000033820 1859 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Tcf25-202ENSMUST00000108840 2582 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Muc13-201ENSMUST00000023520 2942 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Ddx54-201ENSMUST00000031598 4322 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 AC114543.1-201ENSMUST00000226451 1558 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 C130026I21Rik-202ENSMUST00000093506 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Myo18b-201ENSMUST00000086617 8280 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Cdx1P18111 Sox8-201ENSMUST00000025003 3000 ntAPPRIS P2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Snx31-203ENSMUST00000161202 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Gm44826-201ENSMUST00000207648 2332 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Meltf-201ENSMUST00000023464 4133 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 H3f3b-201ENSMUST00000016703 1993 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Nol4l-202ENSMUST00000109784 5610 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Gm12390-201ENSMUST00000117897 397 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Gm5303-201ENSMUST00000117943 1252 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Trav4d-2-201ENSMUST00000120914 335 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Gm13385-201ENSMUST00000121089 220 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Gm10863-205ENSMUST00000148028 905 ntTSL 3 BASIC9.98□□□□□ -0.81
Cdx1P18111 Gm15429-201ENSMUST00000151268 798 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Gm12840-201ENSMUST00000156081 627 ntTSL 5 BASIC9.98□□□□□ -0.81
Cdx1P18111 Gnb2-215ENSMUST00000170293 993 ntTSL 5 BASIC9.98□□□□□ -0.81
Cdx1P18111 Ccdc24-209ENSMUST00000171052 891 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Cdx1P18111 Gm3809-201ENSMUST00000180973 1006 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Mir7221-201ENSMUST00000184009 72 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Gm43094-201ENSMUST00000196549 921 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Gm7287-201ENSMUST00000205267 602 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC9.98□□□□□ -0.81
Cdx1P18111 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC9.98□□□□□ -0.81
Cdx1P18111 AC166349.1-201ENSMUST00000220866 695 ntBASIC9.98□□□□□ -0.81
Cdx1P18111 Tex13c3-201ENSMUST00000089246 876 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Plagl1-203ENSMUST00000121766 3897 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Rdh11-201ENSMUST00000085254 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Ncoa3-202ENSMUST00000109252 5757 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
Cdx1P18111 Acp5-202ENSMUST00000115315 1349 ntAPPRIS P1 TSL 2 BASIC9.98□□□□□ -0.81
Cdx1P18111 Agtrap-201ENSMUST00000030865 3996 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Dis3l-201ENSMUST00000068367 3605 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Grik3-201ENSMUST00000030676 8973 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Rims2-202ENSMUST00000082054 4800 ntAPPRIS P3 TSL 2 BASIC9.98□□□□□ -0.81
Cdx1P18111 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Rbm12b1-201ENSMUST00000050069 2949 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Gpr179-201ENSMUST00000093942 9219 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
Cdx1P18111 Neu4-201ENSMUST00000050890 4511 ntAPPRIS P3 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Gm26510-201ENSMUST00000180468 1796 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Trpv3-201ENSMUST00000049676 5835 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 P2ry1-201ENSMUST00000029331 3886 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Gck-201ENSMUST00000102920 2727 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
Cdx1P18111 Rad54l-202ENSMUST00000102705 2780 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Mlc1-201ENSMUST00000042594 2783 ntAPPRIS P2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Hoxc10-201ENSMUST00000001699 1909 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Nup98-201ENSMUST00000070165 4052 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 4930488N24Rik-201ENSMUST00000188802 1527 ntBASIC9.97□□□□□ -0.81
Cdx1P18111 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC9.97□□□□□ -0.81
Cdx1P18111 Aoc2-201ENSMUST00000041095 2543 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Sgce-209ENSMUST00000133306 1619 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Grip1-205ENSMUST00000105262 4996 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Pou2f3-201ENSMUST00000034513 2610 ntAPPRIS ALT2 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Gm8798-201ENSMUST00000211877 1661 ntBASIC9.97□□□□□ -0.81
Cdx1P18111 Ces2d-ps-201ENSMUST00000043209 1656 ntBASIC9.97□□□□□ -0.81
Cdx1P18111 AC160411.1-201ENSMUST00000218544 4560 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Pnma5-202ENSMUST00000114540 2287 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Gm8110-202ENSMUST00000211297 1782 ntTSL 5 BASIC9.97□□□□□ -0.81
Cdx1P18111 Lsm2-202ENSMUST00000114011 840 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Cd99l2-204ENSMUST00000114587 973 ntAPPRIS ALT2 TSL 3 BASIC9.97□□□□□ -0.81
Cdx1P18111 Gm15371-201ENSMUST00000117057 784 ntBASIC9.97□□□□□ -0.81
Cdx1P18111 Mrpl40-202ENSMUST00000119273 778 ntTSL 3 BASIC9.97□□□□□ -0.81
Cdx1P18111 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Mthfsd-206ENSMUST00000133037 1060 ntTSL 5 BASIC9.97□□□□□ -0.81
Cdx1P18111 4933427I22Rik-201ENSMUST00000138672 393 ntTSL 3 BASIC9.97□□□□□ -0.81
Cdx1P18111 Gm14285-201ENSMUST00000146049 380 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Surf2-201ENSMUST00000015017 1203 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
Cdx1P18111 Gm15917-201ENSMUST00000162771 487 ntTSL 2 BASIC9.97□□□□□ -0.81
Cdx1P18111 Gm8835-201ENSMUST00000173096 1169 ntBASIC9.97□□□□□ -0.81
Cdx1P18111 Gm2495-201ENSMUST00000191160 466 ntBASIC9.97□□□□□ -0.81
Cdx1P18111 Gm38230-201ENSMUST00000193572 1159 ntBASIC9.97□□□□□ -0.81
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms