Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm23270-201ENSMUST00000104055 131 ntBASIC11.87□□□□□ -0.51
Msx1P13297 Rhbdl2-202ENSMUST00000106204 1120 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 1700042G07Rik-201ENSMUST00000106492 385 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Prr29-202ENSMUST00000106816 771 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Gm11622-201ENSMUST00000120525 691 ntBASIC11.87□□□□□ -0.51
Msx1P13297 Nbdy-201ENSMUST00000140575 788 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Fez1-208ENSMUST00000163816 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Gm20457-201ENSMUST00000173374 682 ntTSL 3 BASIC11.87□□□□□ -0.51
Msx1P13297 Tnnt1-213ENSMUST00000178163 934 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Gm37973-201ENSMUST00000195767 1289 ntBASIC11.87□□□□□ -0.51
Msx1P13297 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC11.87□□□□□ -0.51
Msx1P13297 Gm18916-201ENSMUST00000198264 1246 ntBASIC11.87□□□□□ -0.51
Msx1P13297 Tmem176b-206ENSMUST00000203355 1202 ntAPPRIS P1 TSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Gm39185-201ENSMUST00000212941 540 ntTSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Gm32468-201ENSMUST00000214199 1040 ntTSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 AC166051.1-201ENSMUST00000214313 210 ntBASIC11.87□□□□□ -0.51
Msx1P13297 AC131743.2-201ENSMUST00000221031 968 ntTSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Lypd2-201ENSMUST00000023260 513 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Itln1-201ENSMUST00000043094 1141 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Mrps21-201ENSMUST00000067298 488 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Vmn1r35-201ENSMUST00000071414 891 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Msx1P13297 Olfr1423-201ENSMUST00000087831 933 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
Msx1P13297 Necap1-201ENSMUST00000032477 2476 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Vps36-201ENSMUST00000033866 3574 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Kcnn2-201ENSMUST00000066890 3682 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 Zbtb7b-201ENSMUST00000029677 3851 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Secisbp2-201ENSMUST00000040117 3328 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Gm14866-201ENSMUST00000149206 2118 ntTSL 2 BASIC11.87□□□□□ -0.51
Msx1P13297 Mlh1-201ENSMUST00000035079 2754 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Cyp4f16-208ENSMUST00000169591 2242 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Gm10544-201ENSMUST00000180516 2239 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Plagl1-201ENSMUST00000121325 3946 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Sars-202ENSMUST00000102625 1866 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Vps4b-202ENSMUST00000112736 4539 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
Msx1P13297 Slc12a8-206ENSMUST00000122427 2070 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
Msx1P13297 E130308A19Rik-201ENSMUST00000052420 3205 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Acta1-201ENSMUST00000034453 1446 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Zbtb44-205ENSMUST00000216649 3157 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Synpo-209ENSMUST00000143275 5040 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Zfp248-205ENSMUST00000161519 2243 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Ntrk2-208ENSMUST00000225583 2719 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Setdb1-201ENSMUST00000015841 4658 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Dgcr14-201ENSMUST00000003621 2819 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Ficd-201ENSMUST00000065698 3133 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Fam13b-201ENSMUST00000040506 3343 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Atp5d-202ENSMUST00000105366 781 ntTSL 2 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm14921-201ENSMUST00000118643 908 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Gm12507-201ENSMUST00000119155 415 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Gm12502-201ENSMUST00000120197 444 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Dlx1as-202ENSMUST00000137251 647 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Gm13570-201ENSMUST00000140763 309 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Gm17208-201ENSMUST00000168388 535 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Gm16617-201ENSMUST00000181008 675 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Gm29054-201ENSMUST00000187589 1185 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Ovol3-201ENSMUST00000189482 731 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 AA914427-201ENSMUST00000193194 1166 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Gm43055-201ENSMUST00000198859 879 ntTSL 3 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm43378-201ENSMUST00000199336 582 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Il6-204ENSMUST00000199765 963 ntAPPRIS ALT2 TSL 2 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm42800-201ENSMUST00000202494 733 ntTSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm19963-201ENSMUST00000208413 1255 ntBASIC11.86□□□□□ -0.51
Msx1P13297 4930578M07Rik-202ENSMUST00000212946 552 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Gm36435-201ENSMUST00000213341 1178 ntTSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm1715-201ENSMUST00000213681 1018 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 AC117797.1-201ENSMUST00000223977 695 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Olfr1441-201ENSMUST00000059033 1088 ntAPPRIS P1 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm6502-202ENSMUST00000097478 1218 ntTSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Ptpn9-201ENSMUST00000034832 4101 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Rabggtb-201ENSMUST00000089950 1381 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm42478-201ENSMUST00000199252 1467 ntBASIC11.86□□□□□ -0.51
Msx1P13297 4933439K11Rik-203ENSMUST00000169111 1869 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Gm16853-201ENSMUST00000181812 1986 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Nek3-202ENSMUST00000110730 2050 ntAPPRIS ALT2 TSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm42840-201ENSMUST00000200303 2251 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Eprs-201ENSMUST00000046514 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Urgcp-203ENSMUST00000118076 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Hacd2-201ENSMUST00000061156 3603 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Pyroxd1-201ENSMUST00000041852 2831 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Ermard-203ENSMUST00000097393 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Tars2-202ENSMUST00000074339 2313 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Pfkfb3-204ENSMUST00000114844 2107 ntTSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Smpd4-206ENSMUST00000163997 1722 ntTSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Ube2a-201ENSMUST00000016452 1732 ntAPPRIS P3 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Ppp6r3-202ENSMUST00000113997 4952 ntAPPRIS ALT1 TSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Slamf7-204ENSMUST00000194531 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Eif4ebp2-202ENSMUST00000167087 1422 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Msx1P13297 Gm28359-201ENSMUST00000187470 1322 ntBASIC11.86□□□□□ -0.51
Msx1P13297 Yipf1-201ENSMUST00000075693 1321 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Shisa3-201ENSMUST00000087241 3760 ntAPPRIS P1 TSL 1 (best) BASIC11.86□□□□□ -0.51
Msx1P13297 Fancc-201ENSMUST00000073029 3165 ntAPPRIS P3 TSL 1 (best) BASIC11.85□□□□□ -0.51
Msx1P13297 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC11.85□□□□□ -0.51
Msx1P13297 Cab39-201ENSMUST00000097666 2369 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Msx1P13297 Zfp819-203ENSMUST00000120935 2156 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Msx1P13297 Wisp1-201ENSMUST00000005255 5097 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Msx1P13297 Parp2-201ENSMUST00000036126 1894 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Msx1P13297 Igf1-203ENSMUST00000105300 1673 ntTSL 1 (best) BASIC11.85□□□□□ -0.51
Retrieved 100 of 76,532 protein–RNA pairs in 45.3 ms