Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Mir483-201ENSMUST00000093631 73 ntBASIC14.25□□□□□ -0.13
Col1a1P11087 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
Col1a1P11087 Gins2-201ENSMUST00000034278 3900 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Tctn2-207ENSMUST00000185820 2733 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Cpsf4l-202ENSMUST00000100248 1375 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 Ism2-201ENSMUST00000051601 1350 ntTSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 AC129931.1-201ENSMUST00000228865 1861 ntBASIC14.24□□□□□ -0.13
Col1a1P11087 Igfals-201ENSMUST00000050714 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Ska1-202ENSMUST00000177604 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Ripk3-202ENSMUST00000168716 1964 ntTSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 Igf2os-203ENSMUST00000141681 4778 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Cul7-201ENSMUST00000043464 5530 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Pggt1b-201ENSMUST00000025354 2736 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 AC126262.1-201ENSMUST00000221802 1904 ntBASIC14.24□□□□□ -0.13
Col1a1P11087 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Ecsit-204ENSMUST00000180180 1676 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Rnf183-203ENSMUST00000107455 1432 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
Col1a1P11087 Tle6-201ENSMUST00000072020 2015 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Trpm4-201ENSMUST00000042194 4234 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Celf4-207ENSMUST00000225477 2626 ntAPPRIS P3 BASIC14.24□□□□□ -0.13
Col1a1P11087 Rffl-205ENSMUST00000103218 1264 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Ighv10-1-201ENSMUST00000103492 359 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col1a1P11087 Rhox3c-202ENSMUST00000115189 648 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 Gm12419-201ENSMUST00000116649 636 ntBASIC14.24□□□□□ -0.13
Col1a1P11087 Rbmx2-ps-201ENSMUST00000119377 930 ntBASIC14.24□□□□□ -0.13
Col1a1P11087 Ighv2-1-201ENSMUST00000170946 353 ntBASIC14.24□□□□□ -0.13
Col1a1P11087 Rhox3a2-204ENSMUST00000184565 823 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 Gm9136-201ENSMUST00000193368 454 ntBASIC14.24□□□□□ -0.13
Col1a1P11087 Fabp6-201ENSMUST00000020672 479 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Gm17931-201ENSMUST00000208132 634 ntBASIC14.24□□□□□ -0.13
Col1a1P11087 Ssr4-201ENSMUST00000002090 765 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 B4galnt3-203ENSMUST00000212457 2958 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 H1foo-201ENSMUST00000037831 1113 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Gm6685-201ENSMUST00000042595 764 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col1a1P11087 Ubr3-201ENSMUST00000055758 8072 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Olfr1350-201ENSMUST00000070985 927 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
Col1a1P11087 Rhox3e-201ENSMUST00000081327 648 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 Gm10334-201ENSMUST00000095999 876 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Rhox3a2-201ENSMUST00000096459 828 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Col1a1P11087 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Col1a1P11087 Adamts2-201ENSMUST00000040523 7266 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Irf2bpl-201ENSMUST00000038422 4098 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Col1a1P11087 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Zbtb17-201ENSMUST00000006377 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Serpinb12-201ENSMUST00000081277 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Tbc1d22bos-202ENSMUST00000163069 1349 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Ski-202ENSMUST00000084103 5309 ntTSL 5 BASIC14.23□□□□□ -0.13
Col1a1P11087 Erg-201ENSMUST00000077773 2232 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Zkscan7-202ENSMUST00000215872 4035 ntTSL 5 BASIC14.23□□□□□ -0.13
Col1a1P11087 Gm28496-202ENSMUST00000137742 2752 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Zc3h12a-201ENSMUST00000036188 2755 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Shc4-203ENSMUST00000110480 3671 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Prrt3-204ENSMUST00000205075 1956 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
Col1a1P11087 Zmynd11-206ENSMUST00000110637 3770 ntTSL 5 BASIC14.23□□□□□ -0.13
Col1a1P11087 Lzts3-201ENSMUST00000045761 4201 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
Col1a1P11087 Cog3-201ENSMUST00000049168 4222 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Irf1-203ENSMUST00000108922 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
Col1a1P11087 Gm25063-201ENSMUST00000104666 94 ntBASIC14.23□□□□□ -0.13
Col1a1P11087 Ifna2-201ENSMUST00000105147 1032 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Col1a1P11087 Gsg1-202ENSMUST00000111909 1087 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Col1a1P11087 Rbm3-205ENSMUST00000115619 969 ntAPPRIS ALT1 TSL 3 BASIC14.23□□□□□ -0.13
Col1a1P11087 Gm16001-201ENSMUST00000127989 875 ntTSL 3 BASIC14.23□□□□□ -0.13
Col1a1P11087 Gm16686-201ENSMUST00000141816 396 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
Col1a1P11087 Gm9116-201ENSMUST00000192400 1018 ntBASIC14.23□□□□□ -0.13
Col1a1P11087 Ap3s1-202ENSMUST00000224622 978 ntBASIC14.23□□□□□ -0.13
Col1a1P11087 Gm25201-201ENSMUST00000083093 170 ntBASIC14.23□□□□□ -0.13
Col1a1P11087 Lhfpl1-201ENSMUST00000040084 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Neurl3-201ENSMUST00000056946 2598 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Spdye4a-203ENSMUST00000195900 1496 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
Col1a1P11087 Aifm3-201ENSMUST00000023448 2688 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Msh4-201ENSMUST00000005630 3325 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Hspa12b-201ENSMUST00000099349 3413 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Ddi2-202ENSMUST00000177592 3539 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Ttll5-203ENSMUST00000095536 4150 ntAPPRIS ALT2 TSL 2 BASIC14.23□□□□□ -0.13
Col1a1P11087 Ppp1r9b-202ENSMUST00000107748 3095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 Fbxw7-204ENSMUST00000107679 4473 ntAPPRIS ALT1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Col1a1P11087 CT030684.3-201ENSMUST00000227308 2445 ntBASIC14.23□□□□□ -0.13
Col1a1P11087 Gm9866-202ENSMUST00000182473 1882 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Nol10-201ENSMUST00000046011 3021 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Slc25a15-201ENSMUST00000033871 3430 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Gm28323-201ENSMUST00000186817 2499 ntBASIC14.22□□□□□ -0.13
Col1a1P11087 Ebna1bp2-201ENSMUST00000030501 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 5530401A14Rik-201ENSMUST00000021044 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Picalm-213ENSMUST00000208742 3361 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Fancc-218ENSMUST00000220684 2006 ntTSL 5 BASIC14.22□□□□□ -0.13
Col1a1P11087 Ptprv-210ENSMUST00000183317 6108 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Rad54b-203ENSMUST00000108306 652 ntTSL 3 BASIC14.22□□□□□ -0.13
Col1a1P11087 Gm12969-201ENSMUST00000120199 1004 ntBASIC14.22□□□□□ -0.13
Col1a1P11087 Cntrobos-201ENSMUST00000132834 383 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Gm24398-201ENSMUST00000157870 109 ntBASIC14.22□□□□□ -0.13
Col1a1P11087 Gm29410-201ENSMUST00000188383 694 ntBASIC14.22□□□□□ -0.13
Col1a1P11087 Gm35986-201ENSMUST00000197370 655 ntTSL 2 BASIC14.22□□□□□ -0.13
Col1a1P11087 Fxyd4-203ENSMUST00000203082 815 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 Gm11149-203ENSMUST00000215465 805 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Col1a1P11087 AC160028.1-201ENSMUST00000219645 1095 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Retrieved 100 of 76,532 protein–RNA pairs in 35.9 ms