Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Lhcgr-201ENSMUST00000024916 2553 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Tmsb10-203ENSMUST00000114050 570 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm13453-201ENSMUST00000118708 357 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm11978-201ENSMUST00000122315 466 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 Arf5-202ENSMUST00000169841 768 ntAPPRIS P1 TSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Abhd14a-202ENSMUST00000171678 1262 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm9061-201ENSMUST00000182707 1006 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 AC151286.1-201ENSMUST00000198489 145 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm5279-201ENSMUST00000199575 745 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 Gabarapl1-204ENSMUST00000204956 539 ntAPPRIS P1 TSL 3 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gm11427-203ENSMUST00000215482 1203 ntTSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 2610008E11Rik-204ENSMUST00000220220 799 ntTSL 2 BASIC10.17□□□□□ -0.78
Hmgb3O54879 AC124732.2-201ENSMUST00000221977 316 ntBASIC10.17□□□□□ -0.78
Hmgb3O54879 4930408O17Rik-202ENSMUST00000222624 1131 ntTSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Olfr1412-201ENSMUST00000062964 966 ntAPPRIS P1 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Eya3-213ENSMUST00000180250 5020 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Lrba-204ENSMUST00000194759 9379 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Pipox-201ENSMUST00000017597 1998 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Pigo-201ENSMUST00000067481 3525 ntAPPRIS ALT2 TSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Hdac4-202ENSMUST00000097644 8100 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Lats2-207ENSMUST00000173990 3834 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Odf3-202ENSMUST00000106049 1509 ntTSL 5 BASIC10.17□□□□□ -0.78
Hmgb3O54879 Map4-204ENSMUST00000164930 4925 ntAPPRIS ALT2 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Prx-201ENSMUST00000065487 4497 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Wdr82-201ENSMUST00000020490 3747 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Gnas-203ENSMUST00000087876 3719 ntTSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Chit1-202ENSMUST00000159963 1815 ntAPPRIS P1 TSL 1 (best) BASIC10.17□□□□□ -0.78
Hmgb3O54879 Cep76-201ENSMUST00000097542 3979 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Slc45a4-201ENSMUST00000054266 4664 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Rbbp6-202ENSMUST00000071590 5728 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Helz2-201ENSMUST00000094203 9162 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Grpel1-201ENSMUST00000031099 3528 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Tti2-204ENSMUST00000210129 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Dbx2-201ENSMUST00000054244 3460 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 BC052040-203ENSMUST00000166472 2770 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Svil-204ENSMUST00000127297 6243 ntAPPRIS ALT2 TSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Lclat1-201ENSMUST00000067545 4467 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Lct-201ENSMUST00000073490 6174 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Epb42-201ENSMUST00000023987 2695 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Clec10a-209ENSMUST00000178945 2332 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Mirt1-202ENSMUST00000180667 1633 ntTSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Rab18-201ENSMUST00000097680 2257 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Zdhhc20-201ENSMUST00000089473 5186 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Dlk1-202ENSMUST00000109841 879 ntTSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Snap47-202ENSMUST00000120940 1192 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Gm12352-201ENSMUST00000154452 760 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Mettl26-204ENSMUST00000169085 324 ntTSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC10.16□□□□□ -0.78
Hmgb3O54879 AC238811.1-201ENSMUST00000225302 441 ntBASIC10.16□□□□□ -0.78
Hmgb3O54879 Haus1-201ENSMUST00000048192 1004 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Slc44a1-204ENSMUST00000107647 2176 ntTSL 2 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Cdk5rap1-203ENSMUST00000109731 2160 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Il21r-201ENSMUST00000033000 2499 ntAPPRIS P2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Cbx7-201ENSMUST00000089293 3388 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Ccdc151-202ENSMUST00000115336 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Scn4a-201ENSMUST00000021056 6598 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Unkl-204ENSMUST00000160896 4787 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 4931428F04Rik-202ENSMUST00000171788 3552 ntAPPRIS P1 TSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Adgre5-208ENSMUST00000166939 2980 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Adgre5-201ENSMUST00000002964 2986 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Nfatc4-202ENSMUST00000172271 3775 ntAPPRIS ALT2 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Plagl2-201ENSMUST00000056924 5485 ntAPPRIS P1 TSL 1 (best) BASIC10.16□□□□□ -0.78
Hmgb3O54879 Ciz1-204ENSMUST00000113334 2871 ntAPPRIS P3 TSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Col6a5-201ENSMUST00000165165 8046 ntTSL 5 BASIC10.16□□□□□ -0.78
Hmgb3O54879 Smarca1-205ENSMUST00000141084 1965 ntTSL 2 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Slc2a4-201ENSMUST00000018710 2524 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Fn3krp-201ENSMUST00000038096 2520 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Ccdc167-202ENSMUST00000128751 1365 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Nos3-201ENSMUST00000030834 4132 ntAPPRIS P2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Rasal2-204ENSMUST00000132699 4013 ntAPPRIS ALT2 TSL 5 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Rnf144a-202ENSMUST00000062149 4812 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 4933417C20Rik-201ENSMUST00000193962 1874 ntBASIC10.15□□□□□ -0.78
Hmgb3O54879 Slco2a1-201ENSMUST00000035148 7122 ntAPPRIS P1 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Myh4-201ENSMUST00000018632 6016 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Myo18a-203ENSMUST00000092887 7304 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Steap3-204ENSMUST00000112643 2873 ntTSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Arhgap4-201ENSMUST00000064376 3353 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Sema4c-202ENSMUST00000191642 3892 ntAPPRIS P1 TSL 5 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Pkp3-201ENSMUST00000066873 2848 ntAPPRIS P3 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Inpp5d-201ENSMUST00000042275 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Vamp2-202ENSMUST00000117780 1113 ntTSL 2 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm13223-201ENSMUST00000118609 747 ntBASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm12416-201ENSMUST00000120911 1008 ntBASIC10.15□□□□□ -0.78
Hmgb3O54879 Tex30-211ENSMUST00000150911 960 ntAPPRIS P1 TSL 2 BASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm27390-201ENSMUST00000184516 176 ntBASIC10.15□□□□□ -0.78
Hmgb3O54879 Gm7063-201ENSMUST00000186840 981 ntBASIC10.15□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 194.1 ms