Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Shroom1-202ENSMUST00000093114 2886 ntTSL 2 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Wnt7b-202ENSMUST00000109424 3492 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Rps19-203ENSMUST00000108430 774 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gm16140-201ENSMUST00000117191 1060 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Tspan4-202ENSMUST00000117634 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Sgk1-204ENSMUST00000120509 3096 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 D630024D03Rik-201ENSMUST00000126265 720 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Pigyl-202ENSMUST00000148088 676 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gm8801-201ENSMUST00000173255 1064 ntBASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gm42693-201ENSMUST00000196779 631 ntBASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gm44405-201ENSMUST00000198952 126 ntBASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gm43630-201ENSMUST00000201550 776 ntBASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gemin2-201ENSMUST00000021379 1588 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 CT010431.1-201ENSMUST00000221249 1080 ntBASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Retreg1-206ENSMUST00000228306 1430 ntBASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 B4galt1-201ENSMUST00000030121 3983 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Sit1-201ENSMUST00000030180 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Il25-201ENSMUST00000037863 1064 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Actrt2-201ENSMUST00000060062 1435 ntAPPRIS P1 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gm9899-201ENSMUST00000065519 555 ntBASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Dnal4-202ENSMUST00000069877 1011 ntTSL 5 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Tmem40-201ENSMUST00000072933 1272 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Wnt16-202ENSMUST00000128245 3285 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Kif2c-201ENSMUST00000065896 2842 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Atg7-212ENSMUST00000182902 2543 ntAPPRIS P3 TSL 2 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Gpa33-202ENSMUST00000060833 2515 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Nr2c2-202ENSMUST00000113463 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Rtbdn-201ENSMUST00000067472 1908 ntAPPRIS P2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Rbm39-217ENSMUST00000146297 2580 ntAPPRIS ALT1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Pak6-202ENSMUST00000110853 3677 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 E230029C05Rik-205ENSMUST00000208362 2444 ntTSL 2 BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Abcg8-203ENSMUST00000171915 2284 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Apbb2-216ENSMUST00000162366 6540 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 4930588K23Rik-201ENSMUST00000156827 1963 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
Prpf40aQ9R1C7 Rabepk-207ENSMUST00000145903 2968 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Pex1-201ENSMUST00000006061 4433 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Coro2b-201ENSMUST00000048043 3610 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Mgll-207ENSMUST00000163271 3991 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Ugt1a2-201ENSMUST00000049289 2211 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Fetub-203ENSMUST00000167399 1421 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Zbtb40-201ENSMUST00000049583 7192 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 0610010K14Rik-203ENSMUST00000100950 545 ntTSL 2 BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Nsd3-203ENSMUST00000136107 3818 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 D230022J07Rik-201ENSMUST00000144735 1062 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Rmrp-201ENSMUST00000157463 271 ntBASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Ceacam1-209ENSMUST00000206687 1061 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Rps12-203ENSMUST00000218107 584 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 CU024892.2-201ENSMUST00000224608 832 ntBASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 AL732506.1-201ENSMUST00000226420 281 ntBASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 H2-Oa-201ENSMUST00000025192 1088 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Asb8-201ENSMUST00000059112 1049 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Tmem268-201ENSMUST00000077709 3765 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Csf1-202ENSMUST00000118593 3058 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Gm5053-201ENSMUST00000208361 1678 ntBASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Gm4735-201ENSMUST00000138679 1302 ntBASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Gm29500-201ENSMUST00000185992 1344 ntTSL 5 BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Gm5855-201ENSMUST00000200240 1305 ntBASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Gm6203-201ENSMUST00000209575 1342 ntBASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Cry2-201ENSMUST00000090559 3976 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Astn1-202ENSMUST00000170718 2927 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Cers6-201ENSMUST00000028426 7038 ntAPPRIS P3 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Zbtb6-202ENSMUST00000112932 5077 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Anxa8-201ENSMUST00000022519 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Tekt3-201ENSMUST00000035732 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
Prpf40aQ9R1C7 Lef1-204ENSMUST00000106341 3357 ntTSL 1 (best) BASIC13.58□□□□□ -0.23
Prpf40aQ9R1C7 Lef1-202ENSMUST00000066849 3398 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.23
Prpf40aQ9R1C7 BC055324-202ENSMUST00000097493 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Prpf40aQ9R1C7 Osbp2-203ENSMUST00000102950 3077 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.23
Prpf40aQ9R1C7 Kcnv2-201ENSMUST00000056708 5108 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.23
Prpf40aQ9R1C7 Kdm5c-201ENSMUST00000082177 5520 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Tbc1d14-205ENSMUST00000136189 4436 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Kremen1-201ENSMUST00000020662 4856 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gm43823-201ENSMUST00000197391 1808 ntBASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Slc14a1-203ENSMUST00000160639 2047 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Nek3-201ENSMUST00000033865 2021 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Rara-201ENSMUST00000068133 3384 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Jak1-201ENSMUST00000102781 4906 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Prpf40a-206ENSMUST00000209364 2833 ntAPPRIS ALT2 TSL 5 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Cstf3-201ENSMUST00000028599 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 D630014O11Rik-201ENSMUST00000160562 3019 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Ins2-203ENSMUST00000105931 472 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gm13786-201ENSMUST00000122371 333 ntBASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Bcas1os1-201ENSMUST00000133586 1239 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gm15201-201ENSMUST00000136472 1210 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Snhg20-201ENSMUST00000145438 459 ntTSL 3 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 1110018N20Rik-202ENSMUST00000147446 1162 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gm35082-201ENSMUST00000207308 338 ntTSL 3 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Kdelr1-203ENSMUST00000211234 832 ntTSL 2 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Tpd52l1-205ENSMUST00000215515 857 ntTSL 2 BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Prr13-201ENSMUST00000023810 1224 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gm8399-201ENSMUST00000082300 1117 ntBASIC13.58□□□□□ -0.24
Prpf40aQ9R1C7 Gpihbp1-203ENSMUST00000189874 1652 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms