Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Lrrfip1-204ENSMUST00000097650 2760 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Il2rg-201ENSMUST00000033664 1670 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Lrp1-202ENSMUST00000118455 2097 ntTSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Tubd1-201ENSMUST00000020821 2070 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Gm6203-201ENSMUST00000209575 1342 ntBASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Ctps2-205ENSMUST00000112302 3223 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Ppl-201ENSMUST00000035672 6277 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Rgs3-205ENSMUST00000107424 4084 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Got2-201ENSMUST00000034097 2530 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 R3hdm2-210ENSMUST00000164831 2937 ntTSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Psmd13-208ENSMUST00000163610 1382 ntTSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Cflar-202ENSMUST00000097722 1771 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Slc31a2-201ENSMUST00000084530 1820 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Dcaf10-204ENSMUST00000155551 7250 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 AC164441.2-201ENSMUST00000220818 2746 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Sh3rf1Q69ZI1 Fam161a-203ENSMUST00000109557 1947 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Arid4a-201ENSMUST00000046305 4998 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 AC154639.1-201ENSMUST00000224393 2849 ntBASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Ip6k1-201ENSMUST00000035214 4559 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Plekhn1-203ENSMUST00000217885 1982 ntTSL 5 BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Gm43984-201ENSMUST00000204572 2864 ntBASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Lta4h-201ENSMUST00000016033 2029 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Slc37a1-202ENSMUST00000171233 2929 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Armcx3-202ENSMUST00000086880 2024 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Prickle1-202ENSMUST00000109255 4144 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Sh3rf1Q69ZI1 Samd4-202ENSMUST00000100672 4165 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Slc52a2-201ENSMUST00000023220 2700 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 St6galnac6-201ENSMUST00000072111 2277 ntAPPRIS P3 TSL 5 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Ddo-203ENSMUST00000213503 1759 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm6023-201ENSMUST00000118217 606 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm12241-201ENSMUST00000118330 726 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Cdkn1a-202ENSMUST00000119901 748 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm16379-201ENSMUST00000161469 348 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm9630-201ENSMUST00000178304 885 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm9061-201ENSMUST00000182707 1006 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm36937-201ENSMUST00000192957 429 ntTSL 3 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm8762-201ENSMUST00000193486 339 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm38341-201ENSMUST00000195357 515 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Sox2ot-205ENSMUST00000196795 754 ntTSL 3 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm44632-201ENSMUST00000207245 474 ntTSL 2 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 AC131777.1-201ENSMUST00000214749 387 ntTSL 3 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 AC122305.4-201ENSMUST00000216159 1206 ntBASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gm815-201ENSMUST00000099536 610 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Sema3f-201ENSMUST00000080560 3395 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Mynn-202ENSMUST00000192715 5555 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 F3-201ENSMUST00000029771 1872 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Bckdhb-205ENSMUST00000190166 1398 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Gdpd2-201ENSMUST00000019503 2495 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Slc7a4-202ENSMUST00000090165 1907 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Tbl1xr1-211ENSMUST00000202747 4209 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Dnajc5-201ENSMUST00000072334 6578 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Chchd10-203ENSMUST00000219839 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 4930432B10Rik-201ENSMUST00000181688 2085 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Nfatc2-204ENSMUST00000109184 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Tacc2-201ENSMUST00000033141 3940 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Arsa-202ENSMUST00000165199 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Sh3rf1Q69ZI1 Jph2-202ENSMUST00000109425 4155 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Wapl-202ENSMUST00000090027 4185 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Slc36a1-202ENSMUST00000108867 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Chil1-201ENSMUST00000082060 1687 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Mdh1b-201ENSMUST00000114094 1719 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Pcdhgb2-202ENSMUST00000195112 4661 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Elmod3-204ENSMUST00000141833 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Runx1-202ENSMUST00000113956 4738 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Tspan32-202ENSMUST00000075172 1876 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Gm42706-201ENSMUST00000199733 1910 ntBASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Pdhx-202ENSMUST00000111183 2078 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Rapgef3-205ENSMUST00000129223 3750 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Toe1-202ENSMUST00000106455 1209 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Timm10-202ENSMUST00000111631 564 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Gm2231-201ENSMUST00000125661 612 ntBASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Gm35368-201ENSMUST00000209554 1244 ntTSL 5 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 AC164612.1-201ENSMUST00000216699 517 ntTSL 5 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Mea1-201ENSMUST00000002845 840 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Ccdc113-201ENSMUST00000041569 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Nr0b2-201ENSMUST00000042706 1132 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Acsm4-201ENSMUST00000047045 2152 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Arhgef40-202ENSMUST00000100639 4843 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Gm43579-201ENSMUST00000202387 1307 ntBASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 BC039966-201ENSMUST00000141582 1371 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Yae1d1-204ENSMUST00000222796 1382 ntTSL 5 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Asxl1-205ENSMUST00000227428 6981 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Gm26819-201ENSMUST00000180656 5128 ntTSL 5 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Cd19-204ENSMUST00000206325 2452 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Klhl8-202ENSMUST00000112811 2577 ntTSL 5 BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Duoxa2-201ENSMUST00000028656 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Plekhg2-202ENSMUST00000119990 4880 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Sh3rf1Q69ZI1 Trim46-202ENSMUST00000090924 2721 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 38.7 ms