Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Retreg1-206ENSMUST00000228306 1430 ntBASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Nubp2-201ENSMUST00000044252 1430 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm21964-203ENSMUST00000219454 1513 ntAPPRIS P5 TSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Pef1-201ENSMUST00000030563 1551 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Fnbp1-203ENSMUST00000100207 1680 ntTSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gm2916-202ENSMUST00000181779 1702 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Hmox2-201ENSMUST00000004172 1730 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Sostdc1-201ENSMUST00000041407 1781 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Caln1-201ENSMUST00000086029 1801 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 AC126262.1-201ENSMUST00000221802 1904 ntBASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Npepps-215ENSMUST00000167806 2307 ntTSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Slc25a45-202ENSMUST00000125114 2599 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Lrp8-203ENSMUST00000106732 2648 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Umod-201ENSMUST00000033263 2625 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Cmklr1-201ENSMUST00000047936 2882 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Mrc2-201ENSMUST00000021038 3335 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Gipc3-201ENSMUST00000045102 3521 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Ehbp1l1-202ENSMUST00000075606 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Cdv3-203ENSMUST00000116517 3741 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Rtl5-204ENSMUST00000188731 4325 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 2900026A02Rik-203ENSMUST00000212276 5864 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Samd5-201ENSMUST00000100070 6818 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
Col28a1Q2UY11 Plcg1-202ENSMUST00000103115 4435 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Nars2-201ENSMUST00000044466 3778 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Cchcr1-205ENSMUST00000173903 3054 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Zfp362-202ENSMUST00000106072 2812 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Trappc8-202ENSMUST00000097658 2703 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Nxph2-201ENSMUST00000102945 2579 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Epb41l5-201ENSMUST00000027632 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm45902-202ENSMUST00000140494 2390 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Pde4d-201ENSMUST00000074103 2167 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Map3k2-201ENSMUST00000096575 10791 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 4933435G04Rik-201ENSMUST00000205892 2108 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Hcls1-201ENSMUST00000023531 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gimap5-201ENSMUST00000055558 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Tcf4-234ENSMUST00000201410 1915 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Tcf4-243ENSMUST00000202057 1941 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Kif3b-201ENSMUST00000028977 5635 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm13075-202ENSMUST00000149247 1621 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Kcnb1-204ENSMUST00000207917 11153 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 B230209E15Rik-201ENSMUST00000209115 1597 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Lrch1-201ENSMUST00000088970 4694 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Cabp5-202ENSMUST00000117400 1258 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm11803-201ENSMUST00000119966 444 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm16177-201ENSMUST00000120728 718 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm12329-201ENSMUST00000120829 1007 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm14966-202ENSMUST00000129675 649 ntTSL 2 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Mmgt2-207ENSMUST00000155759 589 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 1700092C10Rik-201ENSMUST00000172547 585 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Ighv2-3-201ENSMUST00000178229 347 ntAPPRIS P1 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 C330013E15Rik-201ENSMUST00000181034 878 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Mhrt-201ENSMUST00000181782 828 ntTSL 2 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm9124-201ENSMUST00000191789 1092 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm9113-201ENSMUST00000192510 1018 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm9131-201ENSMUST00000193557 1089 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm9121-201ENSMUST00000193749 1071 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm19710-201ENSMUST00000200257 640 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gm18054-201ENSMUST00000207539 555 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 CU024892.2-201ENSMUST00000224608 832 ntBASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Tspan8-201ENSMUST00000035563 1244 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Mdk-203ENSMUST00000090602 714 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Jade2-203ENSMUST00000109091 6099 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Jmjd1c-211ENSMUST00000174408 8377 ntAPPRIS ALT2 TSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Jmjd1c-201ENSMUST00000051446 8382 ntAPPRIS P4 TSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Scamp5-201ENSMUST00000046587 3225 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Irak2-201ENSMUST00000059286 3196 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Itgal-202ENSMUST00000117762 5222 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Eng-202ENSMUST00000113272 3021 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Tmeff2-202ENSMUST00000114565 2718 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 L1td1-204ENSMUST00000173659 2547 ntAPPRIS ALT2 TSL 2 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Fn1-216ENSMUST00000189821 7410 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Paip2b-201ENSMUST00000058383 3982 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Gpld1-201ENSMUST00000021773 5224 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Tal1-203ENSMUST00000161601 3703 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Clspn-201ENSMUST00000048391 5027 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Tmem136-201ENSMUST00000061833 3503 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Dlgap4-203ENSMUST00000099145 3402 ntAPPRIS P4 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Accs-201ENSMUST00000041593 2036 ntAPPRIS P3 TSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Cbfa2t2-202ENSMUST00000099178 3247 ntTSL 1 (best) BASIC11.98□□□□□ -0.49
Col28a1Q2UY11 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm37849-201ENSMUST00000194722 1881 ntBASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Zfp853-203ENSMUST00000212715 3133 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Cyyr1-201ENSMUST00000114174 5464 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Tubgcp2-201ENSMUST00000026547 2960 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Bahcc1-202ENSMUST00000118987 10712 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Arap1-202ENSMUST00000084896 4926 ntAPPRIS ALT2 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Chmp3-201ENSMUST00000059462 2654 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Evi5l-208ENSMUST00000176825 3728 ntAPPRIS ALT2 TSL 5 BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Pcdhgb6-201ENSMUST00000003599 4684 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Gm29050-201ENSMUST00000190732 2528 ntTSL 1 (best) BASIC11.97□□□□□ -0.49
Col28a1Q2UY11 Rbp3-201ENSMUST00000035695 5295 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
Retrieved 100 of 76,532 protein–RNA pairs in 76.2 ms