Protein–RNA interactions for Protein: P50220

Nkx2-1, Homeobox protein Nkx-2.1, mousemouse

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx2-1P50220 Krt17-201ENSMUST00000080893 1551 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Nkx2-1P50220 Nfia-202ENSMUST00000075448 9526 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Nkx2-1P50220 Prag1-201ENSMUST00000110492 4780 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Nkx2-1P50220 Slc36a4-201ENSMUST00000061568 6539 ntAPPRIS P2 TSL 1 (best) BASIC10.22□□□□□ -0.77
Nkx2-1P50220 Ctsc-201ENSMUST00000032779 2493 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Nkx2-1P50220 Dnmt3l-201ENSMUST00000000746 1676 ntAPPRIS P1 TSL 1 (best) BASIC10.22□□□□□ -0.77
Nkx2-1P50220 Hnrnpa2b1-203ENSMUST00000114459 1728 ntAPPRIS ALT1 TSL 5 BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Paqr5-201ENSMUST00000034817 3566 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Prr3-203ENSMUST00000172429 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Vmac-202ENSMUST00000164907 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Serpinb2-202ENSMUST00000064916 1996 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Cd40-201ENSMUST00000017799 2986 ntAPPRIS P4 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Oplah-209ENSMUST00000171340 4085 ntAPPRIS P1 TSL 5 BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Ttc4-201ENSMUST00000026480 2121 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Inip-201ENSMUST00000095063 3237 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Plekhg6-201ENSMUST00000042647 3299 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Samd11-204ENSMUST00000218788 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Lnx1-206ENSMUST00000121690 2302 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Padi6-201ENSMUST00000038749 2333 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Gm9008-201ENSMUST00000097218 2353 ntAPPRIS P1 BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Boll-202ENSMUST00000114423 1106 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Gm5687-201ENSMUST00000118252 640 ntBASIC10.21□□□□□ -0.77
Nkx2-1P50220 Tmem128-202ENSMUST00000119047 726 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Prkaca-ps1-201ENSMUST00000120823 919 ntBASIC10.21□□□□□ -0.77
Nkx2-1P50220 Rpl34-203ENSMUST00000133802 711 ntTSL 2 BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Rsf1os2-203ENSMUST00000155074 998 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Gm44397-201ENSMUST00000195950 113 ntBASIC10.21□□□□□ -0.77
Nkx2-1P50220 5330425B07Rik-201ENSMUST00000196714 1027 ntBASIC10.21□□□□□ -0.77
Nkx2-1P50220 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 B9d2-202ENSMUST00000205325 593 ntTSL 2 BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Gm31816-201ENSMUST00000209388 1294 ntTSL 5 BASIC10.21□□□□□ -0.77
Nkx2-1P50220 AC166051.1-201ENSMUST00000214313 210 ntBASIC10.21□□□□□ -0.77
Nkx2-1P50220 Gm6983-201ENSMUST00000214912 628 ntBASIC10.21□□□□□ -0.77
Nkx2-1P50220 AC110091.3-202ENSMUST00000217104 791 ntTSL 5 BASIC10.21□□□□□ -0.77
Nkx2-1P50220 AC099934.3-201ENSMUST00000223192 1147 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Hilpda-201ENSMUST00000054445 982 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.77
Nkx2-1P50220 Cbl-211ENSMUST00000206720 11372 ntAPPRIS P2 TSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Rdh8-201ENSMUST00000066387 1405 ntAPPRIS P1 TSL 2 BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Slc12a7-201ENSMUST00000017900 5142 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 0610040F04Rik-201ENSMUST00000137478 1734 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Nsf-202ENSMUST00000103075 3766 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Maml3-202ENSMUST00000121440 8288 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Cyth3-201ENSMUST00000110727 2068 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Ly6e-210ENSMUST00000188866 2068 ntAPPRIS P1 TSL 3 BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Rimbp2-204ENSMUST00000198941 6446 ntAPPRIS P3 TSL 2 BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Fam126a-203ENSMUST00000115109 2195 ntTSL 5 BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Trf-203ENSMUST00000112645 2339 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Sec14l5-201ENSMUST00000165810 2337 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Sparc-201ENSMUST00000018737 2300 ntAPPRIS P3 TSL 1 (best) BASIC10.21□□□□□ -0.78
Nkx2-1P50220 5930412G12Rik-201ENSMUST00000091324 2403 ntTSL 5 BASIC10.21□□□□□ -0.78
Nkx2-1P50220 4833439L19Rik-208ENSMUST00000153065 2502 ntTSL 5 BASIC10.21□□□□□ -0.78
Nkx2-1P50220 Rbm47-209ENSMUST00000201544 5211 ntAPPRIS P3 TSL 5 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Parvg-201ENSMUST00000023074 2619 ntAPPRIS P3 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Exoc3l4-209ENSMUST00000222897 2665 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Calu-202ENSMUST00000090481 2670 ntAPPRIS ALT1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Spred2-201ENSMUST00000093298 2852 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Phykpl-206ENSMUST00000167797 3116 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Pla2g4f-201ENSMUST00000054651 3116 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Maip1-201ENSMUST00000027114 3540 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Tbl2-204ENSMUST00000153183 7488 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Coa5-201ENSMUST00000027286 3863 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Il22ra1-201ENSMUST00000102546 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Wsb2-202ENSMUST00000111959 1526 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Gnb1l-204ENSMUST00000115601 3507 ntAPPRIS ALT2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Atp5f1-201ENSMUST00000118209 1604 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Gm15821-201ENSMUST00000121995 1210 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Gm11724-201ENSMUST00000125577 472 ntTSL 2 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Lsp1-211ENSMUST00000149521 1910 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Ift27-201ENSMUST00000016781 1012 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Ly6g6e-203ENSMUST00000172678 750 ntAPPRIS P2 TSL 3 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Gsdma-201ENSMUST00000017348 2726 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Hoxb9-202ENSMUST00000174042 2269 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 2700012I20Rik-201ENSMUST00000180525 684 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Prr29-204ENSMUST00000188561 592 ntAPPRIS ALT2 TSL 5 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Prr29-206ENSMUST00000190795 822 ntTSL 5 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Gm44260-201ENSMUST00000204946 2094 ntBASIC10.2□□□□□ -0.78
Nkx2-1P50220 AC135669.1-201ENSMUST00000213585 412 ntBASIC10.2□□□□□ -0.78
Nkx2-1P50220 Gm5626-201ENSMUST00000222151 1058 ntBASIC10.2□□□□□ -0.78
Nkx2-1P50220 Tmc4-201ENSMUST00000038743 2310 ntAPPRIS P2 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Bphl-201ENSMUST00000040656 1253 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Ttr-201ENSMUST00000075312 1219 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Fry-201ENSMUST00000087204 10893 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Ndst1-201ENSMUST00000169273 6070 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Agpat3-205ENSMUST00000105390 3513 ntAPPRIS P1 TSL 5 BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Rab14-201ENSMUST00000028238 3081 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Cnot10-201ENSMUST00000070117 2853 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Lnx1-201ENSMUST00000039744 2727 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
Nkx2-1P50220 Sec14l1-202ENSMUST00000090433 4654 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Gm44086-201ENSMUST00000203251 2349 ntBASIC10.19□□□□□ -0.78
Nkx2-1P50220 Lrmp-201ENSMUST00000032396 2319 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Slc6a13-201ENSMUST00000064580 2234 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Tnfaip3-201ENSMUST00000019997 4422 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Ttc23-202ENSMUST00000107470 1915 ntAPPRIS ALT2 TSL 5 BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Spata13-210ENSMUST00000162945 5469 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Npnt-203ENSMUST00000093971 1830 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Mapk4-202ENSMUST00000159162 3514 ntTSL 5 BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Gnb1l-202ENSMUST00000090086 3549 ntAPPRIS P3 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Krt33a-201ENSMUST00000018399 1683 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Nkx2-1P50220 Adi1-201ENSMUST00000020957 1652 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
Retrieved 100 of 76,532 protein–RNA pairs in 41.1 ms